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The map label for this gene is ydhP [H]

Identifier: 113968852

GI number: 113968852

Start: 588949

End: 590160

Strand: Direct

Name: ydhP [H]

Synonym: Shewmr4_0508

Alternate gene names: 113968852

Gene position: 588949-590160 (Clockwise)

Preceding gene: 113968851

Following gene: 113968857

Centisome position: 12.51

GC content: 53.96

Gene sequence:

>1212_bases
TTGCAAGCAGTTCAACCCCAGACTCAGGCTCAAAGCAGCGCGCTTTGGGTGTTACTCGCCTTGGCATTAGGCACCTTTGC
CTTAGGCACCACAGAATTTGCCGCCATGACCTTAGTGCCTTATATCGCCAGTGATTTAAGTGTTGATGTCGCCCATGTGA
GTTATGCCATCAGTGCCTATGCCCTTGGGGTGGTGGTGGGCTCGCCCATCATTATGGTGCTGGGGGTGAGGATTAAGCGG
CGCACGCTGTTAATCGCCTTGGCCGCCATGATGGCGGTTGCCAATGGTTTAAGCGCCCTAGCACCCAGCTTGAATTGGTT
GGTCTTTTTCCGCTTTTTAAGTGGCTTGCCCCATGGGGCTTACTTTGGGGTGGCTATGTTACTGGCGGCGTCCTTAGTGC
CCCCCGATATGAAGGCTCGAGCGGTTTCTCGGGTGATTATCGGCTTAACCTTAGCCACTATCGTTGGCGTGCCCTTCGCG
ACTTGGATGGGACAAACCGTCGGTTGGCGCTCAGGTATCGGCATAGTGGCGATTATTGCCGCCGTGACTGCTGTGATGCT
GTATTTTCTCGCGCCGAATGTCGCCGTACCGCAAAATGCCAGCCCGAAAAAAGAGCTGCAAACACTGAAGAACCGTGAAG
TTTGGCTCACGCTCGGCATTGCGGCTATCGGTTTTGGCGGGATTTTCTGTGTGTATACCTATCTGGCCGAGACGCTGATC
CAAGTCACCCAAGTCGAGCCCTTTAAAATCCCGGTGATGATTGCGGTCTTTGGAATTGGCGCCACCTTGGGCACTTTAGT
CTGTGGCTGGGCGGCGGATAAGTCGGCGCTGGCGGCGGCATTTTGGTCGCTGGTGTTAAGCACCTTAGTGTTGGCGCTGT
ATCCGAGTTTGACGGGATCTTATTGGGCATTAATGCCGATTGTATTCTTTGTGGGTTCGGGGATTGGTCTAGCAACCATA
GTACAGGCGCGATTAATGGATGTGGCCCCCGATGGGCAAGCCATGACGGGCGCCTTAGTACAATGTGCCTTTAACCTTGC
CAATGCGATTGGCCCATGGGTTGGCAGCTTAGTGATCTTATCAGGCCAAGGCATCGCCGCGACTGGCTATGCCGCAGCGC
TGTTATCCCTCGGTGGTTTAGTCATGTGGTGGTTAACCCATAGGGAGAGTCGCCGCGCTGATAATCTTTGTACTGCAAAC
TGCATTGATTAA

Upstream 100 bases:

>100_bases
GTGAAGTAATGTTGTTTTAGGCCTTATCGACGGGAGCCCCGAGTGGGCTCCTATTTTTTTCTTAGCCAGTTGTCGTTTTA
TAGAATCGCGGAGAAATCGT

Downstream 100 bases:

>100_bases
GCTGACCATGACGGCGCAGATCTATATCTGCGCCGCCTTTAAGTAAACTTCTTAACCTCTTTGTATGGTGATATCGGCGA
TATAACCATGTTCAGTGGCG

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MQAVQPQTQAQSSALWVLLALALGTFALGTTEFAAMTLVPYIASDLSVDVAHVSYAISAYALGVVVGSPIIMVLGVRIKR
RTLLIALAAMMAVANGLSALAPSLNWLVFFRFLSGLPHGAYFGVAMLLAASLVPPDMKARAVSRVIIGLTLATIVGVPFA
TWMGQTVGWRSGIGIVAIIAAVTAVMLYFLAPNVAVPQNASPKKELQTLKNREVWLTLGIAAIGFGGIFCVYTYLAETLI
QVTQVEPFKIPVMIAVFGIGATLGTLVCGWAADKSALAAAFWSLVLSTLVLALYPSLTGSYWALMPIVFFVGSGIGLATI
VQARLMDVAPDGQAMTGALVQCAFNLANAIGPWVGSLVILSGQGIAATGYAAALLSLGGLVMWWLTHRESRRADNLCTAN
CID

Sequences:

>Translated_403_residues
MQAVQPQTQAQSSALWVLLALALGTFALGTTEFAAMTLVPYIASDLSVDVAHVSYAISAYALGVVVGSPIIMVLGVRIKR
RTLLIALAAMMAVANGLSALAPSLNWLVFFRFLSGLPHGAYFGVAMLLAASLVPPDMKARAVSRVIIGLTLATIVGVPFA
TWMGQTVGWRSGIGIVAIIAAVTAVMLYFLAPNVAVPQNASPKKELQTLKNREVWLTLGIAAIGFGGIFCVYTYLAETLI
QVTQVEPFKIPVMIAVFGIGATLGTLVCGWAADKSALAAAFWSLVLSTLVLALYPSLTGSYWALMPIVFFVGSGIGLATI
VQARLMDVAPDGQAMTGALVQCAFNLANAIGPWVGSLVILSGQGIAATGYAAALLSLGGLVMWWLTHRESRRADNLCTAN
CID
>Mature_403_residues
MQAVQPQTQAQSSALWVLLALALGTFALGTTEFAAMTLVPYIASDLSVDVAHVSYAISAYALGVVVGSPIIMVLGVRIKR
RTLLIALAAMMAVANGLSALAPSLNWLVFFRFLSGLPHGAYFGVAMLLAASLVPPDMKARAVSRVIIGLTLATIVGVPFA
TWMGQTVGWRSGIGIVAIIAAVTAVMLYFLAPNVAVPQNASPKKELQTLKNREVWLTLGIAAIGFGGIFCVYTYLAETLI
QVTQVEPFKIPVMIAVFGIGATLGTLVCGWAADKSALAAAFWSLVLSTLVLALYPSLTGSYWALMPIVFFVGSGIGLATI
VQARLMDVAPDGQAMTGALVQCAFNLANAIGPWVGSLVILSGQGIAATGYAAALLSLGGLVMWWLTHRESRRADNLCTAN
CID

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=387, Percent_Identity=34.3669250645995, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1786595, Length=378, Percent_Identity=27.5132275132275, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787808, Length=198, Percent_Identity=29.7979797979798, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI145693198, Length=333, Percent_Identity=22.5225225225225, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42235; Mature: 42235

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure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CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]