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The map label for this gene is ylbK [H]

Identifier: 113968776

GI number: 113968776

Start: 486792

End: 489008

Strand: Direct

Name: ylbK [H]

Synonym: Shewmr4_0432

Alternate gene names: 113968776

Gene position: 486792-489008 (Clockwise)

Preceding gene: 113968775

Following gene: 113968777

Centisome position: 10.34

GC content: 47.45

Gene sequence:

>2217_bases
ATGATGCGTCGAATATTCGCTTCTGTCTTTTTATGTTTACTGTTAACGCCCTTGTATGCGGCAGAACGGCCTAAGGTCGG
GCTGGTGCTCAGTGGTGGTGGCGCTAAAGGTGCCGCCCACGTTGGCGTACTTAAAATCCTAGAAGAACATCAGATCCCCG
TGGACTATATCGCAGGCACCAGTATCGGCGCTTATGTGGCCGGCATGTATTCATTGGGTTACAGCGCCAGTGAAGTCGAA
GCCATTATGATGGGCGTTGATTGGGATAGCGGTTATTCGGATACCATTCCGCGTAATGTCCTGAGTTATCGAGATAAACA
GTTACGTGATCGTTACAATATCCCCCTCAACATTGGTTACAACGAGGGTGAAGTCCGAGCTCCGAGTGGTTTGTTGCGTG
GACAAACCATGTCACAGTTATTACGTCAATCGACCGATCTTGTGCAGCAGTTTGGCGATTTTGATGAGCTAGCCATCCCT
TATCGTGCCGTCGCAACCGACCTAGAAACCAGTTTACCCGTAGTGCTCAACCATGGCAGTTTAGTCAAAGCCATGCAGGC
ATCTGCGACTGTGCCGGGTGCGCTGCAGCCGACACAAATCGATGGCAAGTTATTAGTCGACGGCGGAATAGCCAACAATA
TGCCCGTTGACGTGGTTAAGGCCATGGGCGCGGACATTATCATTGCCGTGGATATCGGCTCGCCACTGGTGACCAAAGAT
AAACTCGATAGCACGATTGCGGTGCTCGATCAGTTATCTAACTTCTTGACCAATGCCAGCACCGAAAAGCAAAAGCAGCT
GCTAACAGATAGAGACGTGCTGATCCGTCCCGCGATCGATGCCTTAAGCACGACTGACTTTACCATCATGCCTTTGGCCC
TCACGCTAGGGAAAGAAGCCGCCAATGGTCAGCTGGATAAATTGCAGAGCATGAGCGTCAGCGCCGAAGAATATGCAGCC
TATGTTGAAGCCAAGAAGGTTAAGGGCAAAAAATTAATGGCGGATGTGGCGCATCCAATCCAAGAAATTGTGTTCGATAA
TCAGTCGAAGGTGAGCCTTAACTTATTGAAGGAAACCTTAGATCTCAAAGCCGGCCAAGCCGTGACTAAGGATGAATTAA
ACGAAGCGTTAAAACGCATCTATTCCCTTAATAAATTTGAGCGCGTGGATGCCGAATTTATTGAATCCGAAGAAGGCCGC
GTGCTGACAGTGACCACTCGGGCTAAATCATGGGGGCCAAATTACTTCCAACTCGGTTTTAACTGGGAGGACGACTTTAG
CACCGAATCGGCCATTAGTTTCGATATGGCCTATACCATGACCGACTTAACCTTTAATGGCGGTGAGTGGCGCAACGAAG
TGAAGCTTGGGTTTGAAAAGCTGTTTGCGACCGAGTTTTATCAACCCTTGGATAGGGATCAAGATTTTTATAGCCGAGCA
CGTTATCAATACGATATCCATAACTGGGATCTATACGATAACAATAACCGCGCCCTTATCTTCGACAAGAAGACCCACAC
TGTTGAACTGGGCATTGGCTATAACTATGTTTTACAAGGTTTTGTTGAGCTAGGTTTAGTGGCTGAAAAGGGCGTTATCG
TTAATGATGCCTGGTTGATTAAGGATTTCGATTTTAAATCCTATGGCGCTTACTTAAGAGCGGGTTATGACAGTTTAGAC
AGTATCAGCTTCCCGACATCGGGCAACCGTATCACCTTAAACGTCTATGTGCGTAACGAAGATTTTGACGATATTGTCGA
TAACAATGAAAACGAATATAGCGTGCAGATTGAGGCCGATTGGAAGGGGGCGCTCAGCGTAGGTAATCATGCCTTTGTGG
GGAAAGCTTCGGTTGCGACCAACAATAACGATGGGCTTAACACCTTACACTTGTCGGATTTAGGGGGATTCTTAAATCTT
TCTGGCTATCACAAGGACTCGCTGACTGGCGCCCATAAACTCTTTGGCGCCTTTGTTTATCAGTATGATTTAGGCCGTGA
TGCCTTAGGAATGACGGATTATCCGCTCTATTTAGGCTTAAGTTTAGAGGCGGGGAATGTCTGGTTTGAGCGAGATGAAG
TCTCACTCTCGGATCTGATTTACGCCTCAAGCCTATACATAGGCACAGATACCTCCATGGGGCCGGCAGCATTGGGTTTT
GGTGTGACCGATATGGGTGATAAATCCATGTATTTATTCATTGGTAAGGCGTTCTAA

Upstream 100 bases:

>100_bases
CCTTACTCACTCATCGGTTCAGATAAAATATCGCTGACGGTTAAATCAATAAATTTGTTAAGATAAGTTGAATTTTTTAT
CCAATAAAAAGTAGCCCACT

Downstream 100 bases:

>100_bases
TTACCCCGAAGGGCATAACTGAGGTTATGCCCTTCGTTTTTATCAACAGTACATAATTCCCGTGTAGCTTCAAAACCGCA
GTTATACTCGTTTGCTGAAA

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 738; Mature: 738

Protein sequence:

>738_residues
MMRRIFASVFLCLLLTPLYAAERPKVGLVLSGGGAKGAAHVGVLKILEEHQIPVDYIAGTSIGAYVAGMYSLGYSASEVE
AIMMGVDWDSGYSDTIPRNVLSYRDKQLRDRYNIPLNIGYNEGEVRAPSGLLRGQTMSQLLRQSTDLVQQFGDFDELAIP
YRAVATDLETSLPVVLNHGSLVKAMQASATVPGALQPTQIDGKLLVDGGIANNMPVDVVKAMGADIIIAVDIGSPLVTKD
KLDSTIAVLDQLSNFLTNASTEKQKQLLTDRDVLIRPAIDALSTTDFTIMPLALTLGKEAANGQLDKLQSMSVSAEEYAA
YVEAKKVKGKKLMADVAHPIQEIVFDNQSKVSLNLLKETLDLKAGQAVTKDELNEALKRIYSLNKFERVDAEFIESEEGR
VLTVTTRAKSWGPNYFQLGFNWEDDFSTESAISFDMAYTMTDLTFNGGEWRNEVKLGFEKLFATEFYQPLDRDQDFYSRA
RYQYDIHNWDLYDNNNRALIFDKKTHTVELGIGYNYVLQGFVELGLVAEKGVIVNDAWLIKDFDFKSYGAYLRAGYDSLD
SISFPTSGNRITLNVYVRNEDFDDIVDNNENEYSVQIEADWKGALSVGNHAFVGKASVATNNNDGLNTLHLSDLGGFLNL
SGYHKDSLTGAHKLFGAFVYQYDLGRDALGMTDYPLYLGLSLEAGNVWFERDEVSLSDLIYASSLYIGTDTSMGPAALGF
GVTDMGDKSMYLFIGKAF

Sequences:

>Translated_738_residues
MMRRIFASVFLCLLLTPLYAAERPKVGLVLSGGGAKGAAHVGVLKILEEHQIPVDYIAGTSIGAYVAGMYSLGYSASEVE
AIMMGVDWDSGYSDTIPRNVLSYRDKQLRDRYNIPLNIGYNEGEVRAPSGLLRGQTMSQLLRQSTDLVQQFGDFDELAIP
YRAVATDLETSLPVVLNHGSLVKAMQASATVPGALQPTQIDGKLLVDGGIANNMPVDVVKAMGADIIIAVDIGSPLVTKD
KLDSTIAVLDQLSNFLTNASTEKQKQLLTDRDVLIRPAIDALSTTDFTIMPLALTLGKEAANGQLDKLQSMSVSAEEYAA
YVEAKKVKGKKLMADVAHPIQEIVFDNQSKVSLNLLKETLDLKAGQAVTKDELNEALKRIYSLNKFERVDAEFIESEEGR
VLTVTTRAKSWGPNYFQLGFNWEDDFSTESAISFDMAYTMTDLTFNGGEWRNEVKLGFEKLFATEFYQPLDRDQDFYSRA
RYQYDIHNWDLYDNNNRALIFDKKTHTVELGIGYNYVLQGFVELGLVAEKGVIVNDAWLIKDFDFKSYGAYLRAGYDSLD
SISFPTSGNRITLNVYVRNEDFDDIVDNNENEYSVQIEADWKGALSVGNHAFVGKASVATNNNDGLNTLHLSDLGGFLNL
SGYHKDSLTGAHKLFGAFVYQYDLGRDALGMTDYPLYLGLSLEAGNVWFERDEVSLSDLIYASSLYIGTDTSMGPAALGF
GVTDMGDKSMYLFIGKAF
>Mature_738_residues
MMRRIFASVFLCLLLTPLYAAERPKVGLVLSGGGAKGAAHVGVLKILEEHQIPVDYIAGTSIGAYVAGMYSLGYSASEVE
AIMMGVDWDSGYSDTIPRNVLSYRDKQLRDRYNIPLNIGYNEGEVRAPSGLLRGQTMSQLLRQSTDLVQQFGDFDELAIP
YRAVATDLETSLPVVLNHGSLVKAMQASATVPGALQPTQIDGKLLVDGGIANNMPVDVVKAMGADIIIAVDIGSPLVTKD
KLDSTIAVLDQLSNFLTNASTEKQKQLLTDRDVLIRPAIDALSTTDFTIMPLALTLGKEAANGQLDKLQSMSVSAEEYAA
YVEAKKVKGKKLMADVAHPIQEIVFDNQSKVSLNLLKETLDLKAGQAVTKDELNEALKRIYSLNKFERVDAEFIESEEGR
VLTVTTRAKSWGPNYFQLGFNWEDDFSTESAISFDMAYTMTDLTFNGGEWRNEVKLGFEKLFATEFYQPLDRDQDFYSRA
RYQYDIHNWDLYDNNNRALIFDKKTHTVELGIGYNYVLQGFVELGLVAEKGVIVNDAWLIKDFDFKSYGAYLRAGYDSLD
SISFPTSGNRITLNVYVRNEDFDDIVDNNENEYSVQIEADWKGALSVGNHAFVGKASVATNNNDGLNTLHLSDLGGFLNL
SGYHKDSLTGAHKLFGAFVYQYDLGRDALGMTDYPLYLGLSLEAGNVWFERDEVSLSDLIYASSLYIGTDTSMGPAALGF
GVTDMGDKSMYLFIGKAF

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI148727335, Length=292, Percent_Identity=30.4794520547945, Blast_Score=113, Evalue=6e-25,
Organism=Homo sapiens, GI148727290, Length=292, Percent_Identity=30.4794520547945, Blast_Score=113, Evalue=7e-25,
Organism=Homo sapiens, GI260656043, Length=290, Percent_Identity=28.9655172413793, Blast_Score=109, Evalue=9e-24,
Organism=Homo sapiens, GI260656039, Length=290, Percent_Identity=28.9655172413793, Blast_Score=109, Evalue=9e-24,
Organism=Homo sapiens, GI260656041, Length=291, Percent_Identity=29.2096219931272, Blast_Score=109, Evalue=1e-23,
Organism=Homo sapiens, GI116256487, Length=291, Percent_Identity=29.2096219931272, Blast_Score=109, Evalue=1e-23,
Organism=Homo sapiens, GI260656037, Length=290, Percent_Identity=28.9655172413793, Blast_Score=109, Evalue=1e-23,
Organism=Escherichia coli, GI226510936, Length=322, Percent_Identity=27.3291925465839, Blast_Score=101, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71997299, Length=288, Percent_Identity=28.8194444444444, Blast_Score=86, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71997289, Length=288, Percent_Identity=28.8194444444444, Blast_Score=86, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI193204778, Length=210, Percent_Identity=28.0952380952381, Blast_Score=71, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6323581, Length=289, Percent_Identity=29.0657439446367, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI28571388, Length=213, Percent_Identity=32.8638497652582, Blast_Score=87, Evalue=6e-17,
Organism=Drosophila melanogaster, GI281376913, Length=213, Percent_Identity=32.3943661971831, Blast_Score=83, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 81476; Mature: 81476

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRRIFASVFLCLLLTPLYAAERPKVGLVLSGGGAKGAAHVGVLKILEEHQIPVDYIAGT
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHEECCC
SIGAYVAGMYSLGYSASEVEAIMMGVDWDSGYSDTIPRNVLSYRDKQLRDRYNIPLNIGY
CHHHHHHHHHHCCCCHHCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECC
NEGEVRAPSGLLRGQTMSQLLRQSTDLVQQFGDFDELAIPYRAVATDLETSLPVVLNHGS
CCCCEECCCCHHCCHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHCCCCCEEECCCH
LVKAMQASATVPGALQPTQIDGKLLVDGGIANNMPVDVVKAMGADIIIAVDIGSPLVTKD
HHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCEEEEEECCCCCCCHH
KLDSTIAVLDQLSNFLTNASTEKQKQLLTDRDVLIRPAIDALSTTDFTIMPLALTLGKEA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEECCHHHHCCCCEEEEEEHEECCCCC
ANGQLDKLQSMSVSAEEYAAYVEAKKVKGKKLMADVAHPIQEIVFDNQSKVSLNLLKETL
CCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
DLKAGQAVTKDELNEALKRIYSLNKFERVDAEFIESEEGRVLTVTTRAKSWGPNYFQLGF
HCCCCCCCCHHHHHHHHHHHHCCCHHHHCCHHHHCCCCCCEEEEEECCCCCCCCEEEEEC
NWEDDFSTESAISFDMAYTMTDLTFNGGEWRNEVKLGFEKLFATEFYQPLDRDQDFYSRA
CCCCCCCCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHC
RYQYDIHNWDLYDNNNRALIFDKKTHTVELGIGYNYVLQGFVELGLVAEKGVIVNDAWLI
CEEEECCCEEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHCEEECCCEEEECEEEE
KDFDFKSYGAYLRAGYDSLDSISFPTSGNRITLNVYVRNEDFDDIVDNNENEYSVQIEAD
EECCCHHHCHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHCCCCCEEEEEEEEC
WKGALSVGNHAFVGKASVATNNNDGLNTLHLSDLGGFLNLSGYHKDSLTGAHKLFGAFVY
CCCEEECCCEEEEEEEEEECCCCCCCEEEEEHHCCCEEECCCCCCCHHHHHHHHHHHHHE
QYDLGRDALGMTDYPLYLGLSLEAGNVWFERDEVSLSDLIYASSLYIGTDTSMGPAALGF
EEECCCCCCCCCCCCEEEEEEEECCCEEEECCCCCHHHHHEEEEEEEECCCCCCCHHHCC
GVTDMGDKSMYLFIGKAF
CCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MMRRIFASVFLCLLLTPLYAAERPKVGLVLSGGGAKGAAHVGVLKILEEHQIPVDYIAGT
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHEECCC
SIGAYVAGMYSLGYSASEVEAIMMGVDWDSGYSDTIPRNVLSYRDKQLRDRYNIPLNIGY
CHHHHHHHHHHCCCCHHCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECC
NEGEVRAPSGLLRGQTMSQLLRQSTDLVQQFGDFDELAIPYRAVATDLETSLPVVLNHGS
CCCCEECCCCHHCCHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHCCCCCEEECCCH
LVKAMQASATVPGALQPTQIDGKLLVDGGIANNMPVDVVKAMGADIIIAVDIGSPLVTKD
HHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCEEEEEECCCCCCCHH
KLDSTIAVLDQLSNFLTNASTEKQKQLLTDRDVLIRPAIDALSTTDFTIMPLALTLGKEA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEECCHHHHCCCCEEEEEEHEECCCCC
ANGQLDKLQSMSVSAEEYAAYVEAKKVKGKKLMADVAHPIQEIVFDNQSKVSLNLLKETL
CCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
DLKAGQAVTKDELNEALKRIYSLNKFERVDAEFIESEEGRVLTVTTRAKSWGPNYFQLGF
HCCCCCCCCHHHHHHHHHHHHCCCHHHHCCHHHHCCCCCCEEEEEECCCCCCCCEEEEEC
NWEDDFSTESAISFDMAYTMTDLTFNGGEWRNEVKLGFEKLFATEFYQPLDRDQDFYSRA
CCCCCCCCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHC
RYQYDIHNWDLYDNNNRALIFDKKTHTVELGIGYNYVLQGFVELGLVAEKGVIVNDAWLI
CEEEECCCEEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHCEEECCCEEEECEEEE
KDFDFKSYGAYLRAGYDSLDSISFPTSGNRITLNVYVRNEDFDDIVDNNENEYSVQIEAD
EECCCHHHCHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHCCCCCEEEEEEEEC
WKGALSVGNHAFVGKASVATNNNDGLNTLHLSDLGGFLNLSGYHKDSLTGAHKLFGAFVY
CCCEEECCCEEEEEEEEEECCCCCCCEEEEEHHCCCEEECCCCCCCHHHHHHHHHHHHHE
QYDLGRDALGMTDYPLYLGLSLEAGNVWFERDEVSLSDLIYASSLYIGTDTSMGPAALGF
EEECCCCCCCCCCCCEEEEEEEECCCEEEECCCCCHHHHHEEEEEEEECCCCCCCHHHCC
GVTDMGDKSMYLFIGKAF
CCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]