BacMap

Definition	Shewanella sp. MR-4 chromosome, complete genome.
Accession	NC_008321
Length	4,706,287

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The map label for this gene is fabG [H]

Identifier: 113968593

GI number: 113968593

Start: 265526

End: 266287

Strand: Direct

Name: fabG [H]

Synonym: Shewmr4_0248

Alternate gene names: 113968593

Gene position: 265526-266287 (Clockwise)

Preceding gene: 113968591

Following gene: 113968595

Centisome position: 5.64

GC content: 50.66

Gene sequence:

>762_bases
ATGAACACAACTCCCATCGCGCTGATCACCGGTGCAAGCCGTGGCTTAGGTAAAAATGCGGTCCTGACCTTAGCCGCACA
AGGTGTTGATATTATTCTAACTTACCAAAGTAATGCTGCAGCGGCCGCCGAGGTGGTTGCGGAAATTGAATGGCACGGAC
GCAAGGCTGTCGCGTTACCGTTAGATGTGGGTAATAGCCAGTCCTTTAGTGATTTTTCTCAACGCGTTAAAACCGCACTC
GAACAGACTTGGCAGCGAGATAGTTTTAACTATCTAGTTAATAATGCTGGGATTGGTATCCATGTGCCCATGGCTGAAAC
CAGTATGGAGCAGTTCGATACTTTGATGAATATTCATGTCAAAGGACCTTTCTTCTTAACTCAGGCTTTGCTGCCTCTGC
TTGCCGATAATGGCAGTATCATCAATGTCTCTACGGGGTTAACGCGCTTTGCTGTTCCGGGATTTGGTGCCTACGCCACT
ATGAAAGGCGCGGTCGAAACCATGACCAAATACTGGGCGAAGGAGCTTGGTCCACGCGGCATTCGCGTTAATGTGCTGGC
TCCCGGTGCAATCGAAACGGACTTTGGTGGTGGTGCCGTCCGGGATAACCGACAGATGAATGAGTTTTTAGCGCAGCAAA
CGGCGTTGGGGCGGGTGGGATTACCCGAAGATATTGGCGGAGCAATCAGTGTCTTGTTGTCACCCGCCGCGGCGTGGATA
AACGCACAACGTATCGAGGCATCTGGCGGTATGTTCTTATAG

Upstream 100 bases:

>100_bases
ATAGTGTGTTTATCCCTCATTGTGCAAGTAATAAGCTGTGTGCAGTGGAATCGCCATGCTGTGCGGCGGCATTAACATAG
ATGAATGAAGAGGATACACA

Downstream 100 bases:

>100_bases
TTCAACGCGATAAAAATAAAGAAAGGGCCAGTGGCCCTTTCTTGTTATCAAGGTAAGTTTCAGCTGGGTTAGAAGAACCC
GAGCGGATTGATATCGTAAC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MNTTPIALITGASRGLGKNAVLTLAAQGVDIILTYQSNAAAAAEVVAEIEWHGRKAVALPLDVGNSQSFSDFSQRVKTAL
EQTWQRDSFNYLVNNAGIGIHVPMAETSMEQFDTLMNIHVKGPFFLTQALLPLLADNGSIINVSTGLTRFAVPGFGAYAT
MKGAVETMTKYWAKELGPRGIRVNVLAPGAIETDFGGGAVRDNRQMNEFLAQQTALGRVGLPEDIGGAISVLLSPAAAWI
NAQRIEASGGMFL

Sequences:

>Translated_253_residues
MNTTPIALITGASRGLGKNAVLTLAAQGVDIILTYQSNAAAAAEVVAEIEWHGRKAVALPLDVGNSQSFSDFSQRVKTAL
EQTWQRDSFNYLVNNAGIGIHVPMAETSMEQFDTLMNIHVKGPFFLTQALLPLLADNGSIINVSTGLTRFAVPGFGAYAT
MKGAVETMTKYWAKELGPRGIRVNVLAPGAIETDFGGGAVRDNRQMNEFLAQQTALGRVGLPEDIGGAISVLLSPAAAWI
NAQRIEASGGMFL
>Mature_253_residues
MNTTPIALITGASRGLGKNAVLTLAAQGVDIILTYQSNAAAAAEVVAEIEWHGRKAVALPLDVGNSQSFSDFSQRVKTAL
EQTWQRDSFNYLVNNAGIGIHVPMAETSMEQFDTLMNIHVKGPFFLTQALLPLLADNGSIINVSTGLTRFAVPGFGAYAT
MKGAVETMTKYWAKELGPRGIRVNVLAPGAIETDFGGGAVRDNRQMNEFLAQQTALGRVGLPEDIGGAISVLLSPAAAWI
NAQRIEASGGMFL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI5031737, Length=248, Percent_Identity=30.6451612903226, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=30.4, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=29.8449612403101, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI19923817, Length=260, Percent_Identity=26.9230769230769, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=26.2948207171315, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=27.4193548387097, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=30.9278350515464, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI59889578, Length=198, Percent_Identity=32.8282828282828, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI20149619, Length=228, Percent_Identity=27.1929824561404, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40254992, Length=255, Percent_Identity=26.2745098039216, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI119392083, Length=192, Percent_Identity=30.7291666666667, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI10190704, Length=253, Percent_Identity=26.4822134387352, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI4503817, Length=229, Percent_Identity=26.2008733624454, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI2367175, Length=257, Percent_Identity=34.2412451361868, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1789378, Length=251, Percent_Identity=31.0756972111554, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787335, Length=251, Percent_Identity=31.0756972111554, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788459, Length=252, Percent_Identity=30.1587301587302, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=28.8702928870293, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=32.3886639676113, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=28.2258064516129, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790717, Length=251, Percent_Identity=25.4980079681275, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=28.4615384615385, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787526, Length=197, Percent_Identity=35.0253807106599, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=26.1044176706827, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786701, Length=191, Percent_Identity=29.8429319371728, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=32.1428571428571, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=31.0756972111554, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17560676, Length=256, Percent_Identity=30.078125, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=27.7566539923954, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI25147288, Length=262, Percent_Identity=28.6259541984733, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=26.8292682926829, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=27.9527559055118, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17508651, Length=265, Percent_Identity=30.9433962264151, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=28.7878787878788, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=29.7709923664122, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI32563809, Length=191, Percent_Identity=30.8900523560209, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=273, Percent_Identity=28.9377289377289, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17507613, Length=191, Percent_Identity=30.8900523560209, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=29.6577946768061, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=29.811320754717, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=26.9961977186312, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=29.811320754717, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17555706, Length=257, Percent_Identity=27.2373540856031, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=28.030303030303, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=273, Percent_Identity=29.3040293040293, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=196, Percent_Identity=31.6326530612245, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=27.5862068965517, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=26.0377358490566, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=24.901185770751, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=196, Percent_Identity=30.1020408163265, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=29.5454545454545, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=28.9473684210526, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=257, Percent_Identity=27.6264591439689, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=257, Percent_Identity=28.0155642023346, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=180, Percent_Identity=28.8888888888889, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6323882, Length=217, Percent_Identity=29.4930875576037, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=33.2, Blast_Score=114, Evalue=8e-26,
Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=31.8367346938775, Blast_Score=104, Evalue=4e-23,
Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=32.9365079365079, Blast_Score=104, Evalue=7e-23,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=33.6, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=32.2709163346614, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI23397609, Length=255, Percent_Identity=27.4509803921569, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24644337, Length=181, Percent_Identity=34.2541436464088, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21358495, Length=208, Percent_Identity=28.8461538461538, Blast_Score=76, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011284
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 26864; Mature: 26864

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTTPIALITGASRGLGKNAVLTLAAQGVDIILTYQSNAAAAAEVVAEIEWHGRKAVALP
CCCCCEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEE
LDVGNSQSFSDFSQRVKTALEQTWQRDSFNYLVNNAGIGIHVPMAETSMEQFDTLMNIHV
EECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCHHHHHHHHHHHHEEEE
KGPFFLTQALLPLLADNGSIINVSTGLTRFAVPGFGAYATMKGAVETMTKYWAKELGPRG
CCHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
IRVNVLAPGAIETDFGGGAVRDNRQMNEFLAQQTALGRVGLPEDIGGAISVLLSPAAAWI
EEEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
NAQRIEASGGMFL
HHEEEECCCCCCC
>Mature Secondary Structure
MNTTPIALITGASRGLGKNAVLTLAAQGVDIILTYQSNAAAAAEVVAEIEWHGRKAVALP
CCCCCEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEE
LDVGNSQSFSDFSQRVKTALEQTWQRDSFNYLVNNAGIGIHVPMAETSMEQFDTLMNIHV
EECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCHHHHHHHHHHHHEEEE
KGPFFLTQALLPLLADNGSIINVSTGLTRFAVPGFGAYATMKGAVETMTKYWAKELGPRG
CCHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
IRVNVLAPGAIETDFGGGAVRDNRQMNEFLAQQTALGRVGLPEDIGGAISVLLSPAAAWI
EEEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
NAQRIEASGGMFL
HHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8759840; 9384377; 9534248; 8654983 [H]