| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
Click here to switch to the map view.
The map label for this gene is exeL [H]
Identifier: 113968509
GI number: 113968509
Start: 185807
End: 186994
Strand: Direct
Name: exeL [H]
Synonym: Shewmr4_0164
Alternate gene names: 113968509
Gene position: 185807-186994 (Clockwise)
Preceding gene: 113968508
Following gene: 113968510
Centisome position: 3.95
GC content: 51.77
Gene sequence:
>1188_bases GTGAGTGAACGGCTATTTATTCGCTTAGGCAGAACCGCAGAGCAGGCATGCTCTTGGCTGGTTTGGTCCGAACAAGAACA AGAAATTATCGCCTCTGGTGAACTTGCCAACGCCCAAGGTTTATCAACCTTAACCGAGCGCGCGGGAAATCGGCCTATCG ATGTATTGGTGCCAGCCTCCGCCATGACGCTCACCAGCGTGAATCTGCCCGAAAAGGGCCAACGCCAGGCCTTAAAAGCC CTGCCTTTTATGCTGGAAGAAACCATCGCCGATGATGTGGATGCGATGCACTTTACCGTTGGCCCACGCAATGGCGATGC CCTCAGCGTGGTAGCCGTTGCCCATGAGCAAATGCAAACTTGGCTTAGCTGCTTGGCTGAAGCGGGTTTAAAAGTGAAGC GTATCGTGCCCGATTGCCTCGCCTTGCCATTGCAGGAATGCCAATGGGCGGCAATGCGTTTCGGTAACGAGTTATTACTG CGTACAGGATTAGGAACCGGCCATAGCCTGCCTTTACCTTGGCTGCCAGTTGCGATGAAGCAACTGACGGCACAGGCCGA CGAAGTGTCGGTCGCCAGTTACACTGAGATGGAGCTGGACGGCGTTGAGCTTAAGCCACAGCCGCTCGATTTACCTATGT TAGTACTGGCGCGTGGCATCTTACATGCGCCCATCAACTTACTCACGGGTGTGTATACGCCGAAGCGCGAATACAGTAAG CATCTGTTGCAATGGAAAAATGCCGCAATCGTGTTAGGTGTTGCCATTGTCTTGTCCCTAGTGAATAAGGGCTTAACTAT TCATCAAGTGAATGGCCAGATTGCCGATCTGAAGGCGCAGAGTGAAGCCATTTATCAACAAGTGGTGCCGGGGAATTCAC GCATTGTGAATCTACGTTCGCAGATGGAAAGCCAACTGCGCGCACTCCAAGGCCAAGGCAGTGGTGCTGAGTTTTTTGCG ATGCTCGATGGTTTACAGGACGCCTTTAAACAAGTGCCCGAGCTGAAACCAAACACCCTAAGATTTGAGAGCGCCCGTAA TGAAATCCGTATGCAAGTCACGGCCAAGAATTACGCGCAAATTGAGAAGTTTAAAGAGATTGTCGGCCGTCGCTTCCAAA TGGATGGCGGTACGATGAACAGCGGTGAAGATCAGGTCACCAGTACCTTAACCTTGAGGAGCAAATAA
Upstream 100 bases:
>100_bases CAGCGGTAACAAAATGGATGTGCTCACCCGTCAGTTTGGTGGACAAAAATAATAGCAAACAAGCTCAATCTTTTAAGATG GAAGCTGGTGGAGAAAAACT
Downstream 100 bases:
>100_bases GATGGATAATTTGCGGACTTGGTGGCAAGGGCTTGCATCGCGCGAGCAGCAAATCGTCGGCTTCGGCGCCGTTTTCTTAG TGATCGGCGTGTTTTACTGG
Product: general secretion pathway protein L
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 395; Mature: 394
Protein sequence:
>395_residues MSERLFIRLGRTAEQACSWLVWSEQEQEIIASGELANAQGLSTLTERAGNRPIDVLVPASAMTLTSVNLPEKGQRQALKA LPFMLEETIADDVDAMHFTVGPRNGDALSVVAVAHEQMQTWLSCLAEAGLKVKRIVPDCLALPLQECQWAAMRFGNELLL RTGLGTGHSLPLPWLPVAMKQLTAQADEVSVASYTEMELDGVELKPQPLDLPMLVLARGILHAPINLLTGVYTPKREYSK HLLQWKNAAIVLGVAIVLSLVNKGLTIHQVNGQIADLKAQSEAIYQQVVPGNSRIVNLRSQMESQLRALQGQGSGAEFFA MLDGLQDAFKQVPELKPNTLRFESARNEIRMQVTAKNYAQIEKFKEIVGRRFQMDGGTMNSGEDQVTSTLTLRSK
Sequences:
>Translated_395_residues MSERLFIRLGRTAEQACSWLVWSEQEQEIIASGELANAQGLSTLTERAGNRPIDVLVPASAMTLTSVNLPEKGQRQALKA LPFMLEETIADDVDAMHFTVGPRNGDALSVVAVAHEQMQTWLSCLAEAGLKVKRIVPDCLALPLQECQWAAMRFGNELLL RTGLGTGHSLPLPWLPVAMKQLTAQADEVSVASYTEMELDGVELKPQPLDLPMLVLARGILHAPINLLTGVYTPKREYSK HLLQWKNAAIVLGVAIVLSLVNKGLTIHQVNGQIADLKAQSEAIYQQVVPGNSRIVNLRSQMESQLRALQGQGSGAEFFA MLDGLQDAFKQVPELKPNTLRFESARNEIRMQVTAKNYAQIEKFKEIVGRRFQMDGGTMNSGEDQVTSTLTLRSK >Mature_394_residues SERLFIRLGRTAEQACSWLVWSEQEQEIIASGELANAQGLSTLTERAGNRPIDVLVPASAMTLTSVNLPEKGQRQALKAL PFMLEETIADDVDAMHFTVGPRNGDALSVVAVAHEQMQTWLSCLAEAGLKVKRIVPDCLALPLQECQWAAMRFGNELLLR TGLGTGHSLPLPWLPVAMKQLTAQADEVSVASYTEMELDGVELKPQPLDLPMLVLARGILHAPINLLTGVYTPKREYSKH LLQWKNAAIVLGVAIVLSLVNKGLTIHQVNGQIADLKAQSEAIYQQVVPGNSRIVNLRSQMESQLRALQGQGSGAEFFAM LDGLQDAFKQVPELKPNTLRFESARNEIRMQVTAKNYAQIEKFKEIVGRRFQMDGGTMNSGEDQVTSTLTLRSK
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]
COG id: COG3297
COG function: function code U; Type II secretory pathway, component PulL
Gene ontology:
Cell location: Cell inner membrane (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP L family [H]
Homologues:
Organism=Escherichia coli, GI87082244, Length=394, Percent_Identity=22.3350253807107, Blast_Score=80, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007812 [H]
Pfam domain/function: PF05134 GspL [H]
EC number: NA
Molecular weight: Translated: 43478; Mature: 43347
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSERLFIRLGRTAEQACSWLVWSEQEQEIIASGELANAQGLSTLTERAGNRPIDVLVPAS CCCCEEEEECCCHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEECCC AMTLTSVNLPEKGQRQALKALPFMLEETIADDVDAMHFTVGPRNGDALSVVAVAHEQMQT EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEHHHHHHHHHHH WLSCLAEAGLKVKRIVPDCLALPLQECQWAAMRFGNELLLRTGLGTGHSLPLPWLPVAMK HHHHHHHCCCEEEHHCHHHHHCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHH QLTAQADEVSVASYTEMELDGVELKPQPLDLPMLVLARGILHAPINLLTGVYTPKREYSK HHHHHHCCCEEHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCHHHHHH HLLQWKNAAIVLGVAIVLSLVNKGLTIHQVNGQIADLKAQSEAIYQQVVPGNSRIVNLRS HHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCEEHHHHHHHHHHHHHCCCCCEEEEHHH QMESQLRALQGQGSGAEFFAMLDGLQDAFKQVPELKPNTLRFESARNEIRMQVTAKNYAQ HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEHHCCCCEEEEEEHHHHHH IEKFKEIVGRRFQMDGGTMNSGEDQVTSTLTLRSK HHHHHHHHCCEEECCCCCCCCCCHHHHEEEEECCC >Mature Secondary Structure SERLFIRLGRTAEQACSWLVWSEQEQEIIASGELANAQGLSTLTERAGNRPIDVLVPAS CCCEEEEECCCHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEECCC AMTLTSVNLPEKGQRQALKALPFMLEETIADDVDAMHFTVGPRNGDALSVVAVAHEQMQT EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEHHHHHHHHHHH WLSCLAEAGLKVKRIVPDCLALPLQECQWAAMRFGNELLLRTGLGTGHSLPLPWLPVAMK HHHHHHHCCCEEEHHCHHHHHCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHH QLTAQADEVSVASYTEMELDGVELKPQPLDLPMLVLARGILHAPINLLTGVYTPKREYSK HHHHHHCCCEEHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCHHHHHH HLLQWKNAAIVLGVAIVLSLVNKGLTIHQVNGQIADLKAQSEAIYQQVVPGNSRIVNLRS HHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCEEHHHHHHHHHHHHHCCCCCEEEEHHH QMESQLRALQGQGSGAEFFAMLDGLQDAFKQVPELKPNTLRFESARNEIRMQVTAKNYAQ HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEHHCCCCEEEEEEHHHHHH IEKFKEIVGRRFQMDGGTMNSGEDQVTSTLTLRSK HHHHHHHHCCEEECCCCCCCCCCHHHHEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8407845 [H]