| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is fdnG [H]
Identifier: 113968446
GI number: 113968446
Start: 113109
End: 113690
Strand: Direct
Name: fdnG [H]
Synonym: Shewmr4_0101
Alternate gene names: 113968446
Gene position: 113109-113690 (Clockwise)
Preceding gene: 113968445
Following gene: 113968447
Centisome position: 2.4
GC content: 50.0
Gene sequence:
>582_bases ATGAACAGACGCCAGTTTTTTAAACTGTGTGCGGCCGGAGCGGCAACCTCAGCGATTTCAGCGCTGGGATTGATGTCCGA AAAGGCCTATGCAGCAGTGCGAGAGTTTAAGCTGATCGGAGCCAAAGAAACCCGTAACAACTGTCCGTATTGCTCGGTCG GTTGTGGCCTGCTGATGTACAGCCAAGGCAGTGGGGGCAAAAACTCTGAGCATGCTATTTTCCATATCGAGGGTGATGCC GATCATCCAGTAAACCGAGGTGCATTGTGCTCTAAGGGTGCAGGCCTTGTGGATTATGTTAACAGTCCACACCGTTTACA GTATCCAGAATATCGCGCCCCCGGCAGCAACAAGTGGGAACGGATCAGCTGGCATGATGCCTTTAAACGTATTGCTCGTT TAATGAAAGATGACCGTGATGCGAACCTAATTGAGAAAAACGCCGATGGCGTAACGGTTAACCGTTGGTTAACCACAGGG ATGATGACCTCATCCGGTATGGCCAATGAAAGTGGCTTAGCGACACAAAAATTTGCGCGCGCTTTAGGCCTAGTGGCTAT CGATACTATTGCACGTAACTGA
Upstream 100 bases:
>100_bases AATCTTAGATTAAGTGGGGGCTTTATTGACTCACTCAAACGATTGCAGCGTTACCACTGCAATTACCAAACTCATAACGA CAAAAGTGTGAGAGAACGCT
Downstream 100 bases:
>100_bases CACTCCCCAACGGTAGCAAGTCTTGCTCCAACATTTGGGCGCGGTGCCATGACCAACCACTGGATCGATATTAAAAATTC TAACGTAGTGATTATTATGG
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: Anaerobic formate dehydrogenase major subunit; Formate dehydrogenase-N subunit alpha; FDH-N subunit alpha [H]
Number of amino acids: Translated: 193; Mature: 193
Protein sequence:
>193_residues MNRRQFFKLCAAGAATSAISALGLMSEKAYAAVREFKLIGAKETRNNCPYCSVGCGLLMYSQGSGGKNSEHAIFHIEGDA DHPVNRGALCSKGAGLVDYVNSPHRLQYPEYRAPGSNKWERISWHDAFKRIARLMKDDRDANLIEKNADGVTVNRWLTTG MMTSSGMANESGLATQKFARALGLVAIDTIARN
Sequences:
>Translated_193_residues MNRRQFFKLCAAGAATSAISALGLMSEKAYAAVREFKLIGAKETRNNCPYCSVGCGLLMYSQGSGGKNSEHAIFHIEGDA DHPVNRGALCSKGAGLVDYVNSPHRLQYPEYRAPGSNKWERISWHDAFKRIARLMKDDRDANLIEKNADGVTVNRWLTTG MMTSSGMANESGLATQKFARALGLVAIDTIARN >Mature_193_residues MNRRQFFKLCAAGAATSAISALGLMSEKAYAAVREFKLIGAKETRNNCPYCSVGCGLLMYSQGSGGKNSEHAIFHIEGDA DHPVNRGALCSKGAGLVDYVNSPHRLQYPEYRAPGSNKWERISWHDAFKRIARLMKDDRDANLIEKNADGVTVNRWLTTG MMTSSGMANESGLATQKFARALGLVAIDTIARN
Specific function: Formate dehydrogenase allows E.coli to use formate as major electron donor during anaerobic respiration, when nitrate is used as electron acceptor. The alpha subunit forms the active site [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI3868719, Length=192, Percent_Identity=66.6666666666667, Blast_Score=284, Evalue=2e-78, Organism=Escherichia coli, GI3868720, Length=192, Percent_Identity=63.5416666666667, Blast_Score=273, Evalue=7e-75,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006443 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: =1.2.1.2 [H]
Molecular weight: Translated: 21061; Mature: 21061
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRRQFFKLCAAGAATSAISALGLMSEKAYAAVREFKLIGAKETRNNCPYCSVGCGLLMY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCEEECCCCEEEE SQGSGGKNSEHAIFHIEGDADHPVNRGALCSKGAGLVDYVNSPHRLQYPEYRAPGSNKWE ECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC RISWHDAFKRIARLMKDDRDANLIEKNADGVTVNRWLTTGMMTSSGMANESGLATQKFAR CCCHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCHHHHHHH ALGLVAIDTIARN HHHHHHHHHHHCC >Mature Secondary Structure MNRRQFFKLCAAGAATSAISALGLMSEKAYAAVREFKLIGAKETRNNCPYCSVGCGLLMY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCEEECCCCEEEE SQGSGGKNSEHAIFHIEGDADHPVNRGALCSKGAGLVDYVNSPHRLQYPEYRAPGSNKWE ECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC RISWHDAFKRIARLMKDDRDANLIEKNADGVTVNRWLTTGMMTSSGMANESGLATQKFAR CCCHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCHHHHHHH ALGLVAIDTIARN HHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1834669; 9097039; 9278503; 11884747 [H]