| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
Click here to switch to the map view.
The map label for this gene is 113968437
Identifier: 113968437
GI number: 113968437
Start: 100931
End: 101944
Strand: Direct
Name: 113968437
Synonym: Shewmr4_0092
Alternate gene names: NA
Gene position: 100931-101944 (Clockwise)
Preceding gene: 113968436
Following gene: 113968438
Centisome position: 2.14
GC content: 45.07
Gene sequence:
>1014_bases ATGAGTTCGATTGAATTTGATATTCCCGAAGATCACCGTATTCCCTTTCAGAAGTATTACAAACAAAAAATCGCCCCTAA ATGCGCCCCGTTTGAAGCAAAGCGTGAAGGCGTGAACCAAAGGCGGCGTGAAAATGCCAAGTTTACCACCCCAATCTACT ACATATGCATCACGGTTATTTTGGGTGCCTTCGCTGGGCTGCTCGGGGTGCAGTTTATGCTGGTGCCTATGGATTATTTT GTGCCTTTGATGATTGGCGCGTTTCTGCCGACTCCCGTGATAGCGTTAGTGGCGATTGCCTCGGGAAAGGAAAGCAATGA ACTCTATAATGCCGCCTTTGAAAAACTCTATCCCATTAGTCTCAAGTACTTTGGCAATGATTATGCGTTAACGAGGGAAC CTAAGGTGGACTTCTCAACCTTCCTTGAGTTGGGGCTGTTGCCTAAAACCGATAAACAGTATGCACAAAATTGCCTTAAG GGAACCTATAACAAGGTGCCGTTCAAGTTTTATGAGGTCGATGCTTACAACACTAAATCGAACAATAACGGCTCGGTTGA GCGAGAGACCATCTTCAATGGTGTGCTACTGGTGTGCAATATTCCTAAGCGATTCAACGGTACGACCTTGTTAGTCACGG ATAAGGGCAGTTTAAAAAATCGTATTGAGGGGTTTAAGACAAAGCTGTCGCGGGTCAAGCTTGAGGATGTACGTTTCGAG CGTTGTTTTGAGGTGTATAGCAGCGACCAAGTCGAGGCGCGCTATTTACTCAATCCCTTGATGATGGAAAATCTCTTGGC CCTAGGCCGCGAGCTAAATGCCGAGGTGGAAGCCTGTTTCTATCAAAAACAATTGCTGATTAAGATCCCGACAAAACACC ATTTCTTTATCAATCAACTCGATTTAGATCGCCCCATCGATTTTAAGCTCAATATCGAGCGGATGTTTACCGAGTTAGGT TATACCTTCTCGATCATCGATACCTTAAGGCTCGATAAACATACCGGGTTATAG
Upstream 100 bases:
>100_bases GGGCTTAATCGGTCATTTGTTGGCCTTAAACTGGCCTTGCTGAAATAAAATCCGTAAAATCATTGGCCTAAATGGATTTG AATCGTAAGAGTAGGAGCCA
Downstream 100 bases:
>100_bases CAATAGTCGCCTCAATAGCAGCCACGTTCTGTGGCTGCTTTATGCGGCAGCTTAAAACATGACTTTTGGCACTTATGGGT GACTCCCCGTGCTCGTTAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MSSIEFDIPEDHRIPFQKYYKQKIAPKCAPFEAKREGVNQRRRENAKFTTPIYYICITVILGAFAGLLGVQFMLVPMDYF VPLMIGAFLPTPVIALVAIASGKESNELYNAAFEKLYPISLKYFGNDYALTREPKVDFSTFLELGLLPKTDKQYAQNCLK GTYNKVPFKFYEVDAYNTKSNNNGSVERETIFNGVLLVCNIPKRFNGTTLLVTDKGSLKNRIEGFKTKLSRVKLEDVRFE RCFEVYSSDQVEARYLLNPLMMENLLALGRELNAEVEACFYQKQLLIKIPTKHHFFINQLDLDRPIDFKLNIERMFTELG YTFSIIDTLRLDKHTGL
Sequences:
>Translated_337_residues MSSIEFDIPEDHRIPFQKYYKQKIAPKCAPFEAKREGVNQRRRENAKFTTPIYYICITVILGAFAGLLGVQFMLVPMDYF VPLMIGAFLPTPVIALVAIASGKESNELYNAAFEKLYPISLKYFGNDYALTREPKVDFSTFLELGLLPKTDKQYAQNCLK GTYNKVPFKFYEVDAYNTKSNNNGSVERETIFNGVLLVCNIPKRFNGTTLLVTDKGSLKNRIEGFKTKLSRVKLEDVRFE RCFEVYSSDQVEARYLLNPLMMENLLALGRELNAEVEACFYQKQLLIKIPTKHHFFINQLDLDRPIDFKLNIERMFTELG YTFSIIDTLRLDKHTGL >Mature_336_residues SSIEFDIPEDHRIPFQKYYKQKIAPKCAPFEAKREGVNQRRRENAKFTTPIYYICITVILGAFAGLLGVQFMLVPMDYFV PLMIGAFLPTPVIALVAIASGKESNELYNAAFEKLYPISLKYFGNDYALTREPKVDFSTFLELGLLPKTDKQYAQNCLKG TYNKVPFKFYEVDAYNTKSNNNGSVERETIFNGVLLVCNIPKRFNGTTLLVTDKGSLKNRIEGFKTKLSRVKLEDVRFER CFEVYSSDQVEARYLLNPLMMENLLALGRELNAEVEACFYQKQLLIKIPTKHHFFINQLDLDRPIDFKLNIERMFTELGY TFSIIDTLRLDKHTGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38873; Mature: 38741
Theoretical pI: Translated: 8.69; Mature: 8.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSIEFDIPEDHRIPFQKYYKQKIAPKCAPFEAKREGVNQRRRENAKFTTPIYYICITVI CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH LGAFAGLLGVQFMLVPMDYFVPLMIGAFLPTPVIALVAIASGKESNELYNAAFEKLYPIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEE LKYFGNDYALTREPKVDFSTFLELGLLPKTDKQYAQNCLKGTYNKVPFKFYEVDAYNTKS EEEECCCEEECCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCC NNNGSVERETIFNGVLLVCNIPKRFNGTTLLVTDKGSLKNRIEGFKTKLSRVKLEDVRFE CCCCCCHHHHHHCCEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH RCFEVYSSDQVEARYLLNPLMMENLLALGRELNAEVEACFYQKQLLIKIPTKHHFFINQL HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCEEEEECCCCCCEEEEEE DLDRPIDFKLNIERMFTELGYTFSIIDTLRLDKHTGL CCCCCCCEEEEHHHHHHHHCCCEEEHHHHHHHHCCCC >Mature Secondary Structure SSIEFDIPEDHRIPFQKYYKQKIAPKCAPFEAKREGVNQRRRENAKFTTPIYYICITVI CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH LGAFAGLLGVQFMLVPMDYFVPLMIGAFLPTPVIALVAIASGKESNELYNAAFEKLYPIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEE LKYFGNDYALTREPKVDFSTFLELGLLPKTDKQYAQNCLKGTYNKVPFKFYEVDAYNTKS EEEECCCEEECCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCC NNNGSVERETIFNGVLLVCNIPKRFNGTTLLVTDKGSLKNRIEGFKTKLSRVKLEDVRFE CCCCCCHHHHHHCCEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH RCFEVYSSDQVEARYLLNPLMMENLLALGRELNAEVEACFYQKQLLIKIPTKHHFFINQL HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCEEEEECCCCCCEEEEEE DLDRPIDFKLNIERMFTELGYTFSIIDTLRLDKHTGL CCCCCCCEEEEHHHHHHHHCCCEEEHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA