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The map label for this gene is ydfH [C]

Identifier: 116696420

GI number: 116696420

Start: 2809362

End: 2810180

Strand: Direct

Name: ydfH [C]

Synonym: H16_B2484

Alternate gene names: 116696420

Gene position: 2809362-2810180 (Clockwise)

Preceding gene: 116696419

Following gene: 116696421

Centisome position: 96.46

GC content: 69.35

Gene sequence:

>819_bases
ATGGCAACCACATCGAAGAAGGCGGCGCCCGGCGCGGCAGCAAAAACGCCGCGCCGGCCCGCGTCCAAGGCAACCCTGAA
AACGGCACCCAAGGCCGCCGCCAATGCCGCACCGGAGGAAAGCGCCGGCCCGGAGGCCGCCGCCAGCGAAGCTTCCGCCA
CCGAGGCCATCTACCTCAGCCTGCTGACCGCGATCATGGAGCATCGCCTGCTGGCCGGCACCAAGCTGGTCGAGGAACGG
CTGTGCGAAGTGACCGGCGCCAGCCGGGCCCGCATCCGCCAGGTCTTCGCGCGCCTGGCGCATGAGAAGCTGGTCACGCT
GGTGCCCAATCGCGGCGCCTTTGTCTCCAGCCCCACGGTGGACGAGGCGCGCGAGGTGTTCCAGGCGCGCCGCGTGGTCG
AGCCCGCGCTGGCGGCCGAACTGGCCCAGCGTGCCACGCCGGCCAAAGTCCGCAGCCTGCGCCGCCATGCCATGGAAGAA
GACAACGCGCGCGCGCGCGGCGACCGCGCCGCGATGATCCGCCTGTCGGGGGAATTCCATATCCTGCTGGCGGAGATGGC
CGGCAATGCCATCCTCGAAAAGCTGATCCGCGAGATGGTGTCACTGACATGCCTGATCATCACGCTGTATGACCGCCCCG
GCGCACCGGCCTGCGCCGAGCATGAGCACCGCCAGCTGACCGACGCCATCGAGCAGCGCGACGCCGCGCGCGCCAGCGCG
TTGATGGCGGAACACCTGGAACACATCGAGGGTTCGCTCGACCTGAGCGTGCCCGACAGCGGCGCGCCGGACTTCTACAG
CATCTTCAGCAAGGGTTGA

Upstream 100 bases:

>100_bases
CCCGGCCTGACAAATGCCGTCCGTGTCGCCATATTTGTGTACGATATAGCCGTCTTTCGTCGCCAGTTCCGGCGACAGGC
TGAAATGTCCGTCCCCTGAT

Downstream 100 bases:

>100_bases
AGCACGGTGCGGGGGCGCCAGCGGGCGCCTCATGGCCGGCATTGCACTCCGCGCCCGGCAACCTAGACTGGCTGCATAAC
AATGCCGCGCGCAATGCGCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; Transcriptional Regulator Protein GntR Family; Transcriptional Regulator Gntr Family; Transcriptional Regulator GntR Family Protein; GntR Domain-Containing Protein; FCD Domain Protein; GntR Domain Protein; Transcriptional Regulator Protein; GntR Family Regulatory Protein; GntR Family Transcription Regulator Protein; Transcriptional Regulatory Protein GntR Family; Regulatory Protein; Bacterial Regulatory Protein; GntR-Family Protein Transcriptional Regulator; Transcription Regulator Protein; Regulatory Protein GntR HTHGntR; GntR-Type Regulator; TRANSCRIPTIONal REGULATOR GntR Family; Regulatory Protein GntR HTH

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MATTSKKAAPGAAAKTPRRPASKATLKTAPKAAANAAPEESAGPEAAASEASATEAIYLSLLTAIMEHRLLAGTKLVEER
LCEVTGASRARIRQVFARLAHEKLVTLVPNRGAFVSSPTVDEAREVFQARRVVEPALAAELAQRATPAKVRSLRRHAMEE
DNARARGDRAAMIRLSGEFHILLAEMAGNAILEKLIREMVSLTCLIITLYDRPGAPACAEHEHRQLTDAIEQRDAARASA
LMAEHLEHIEGSLDLSVPDSGAPDFYSIFSKG

Sequences:

>Translated_272_residues
MATTSKKAAPGAAAKTPRRPASKATLKTAPKAAANAAPEESAGPEAAASEASATEAIYLSLLTAIMEHRLLAGTKLVEER
LCEVTGASRARIRQVFARLAHEKLVTLVPNRGAFVSSPTVDEAREVFQARRVVEPALAAELAQRATPAKVRSLRRHAMEE
DNARARGDRAAMIRLSGEFHILLAEMAGNAILEKLIREMVSLTCLIITLYDRPGAPACAEHEHRQLTDAIEQRDAARASA
LMAEHLEHIEGSLDLSVPDSGAPDFYSIFSKG
>Mature_271_residues
ATTSKKAAPGAAAKTPRRPASKATLKTAPKAAANAAPEESAGPEAAASEASATEAIYLSLLTAIMEHRLLAGTKLVEERL
CEVTGASRARIRQVFARLAHEKLVTLVPNRGAFVSSPTVDEAREVFQARRVVEPALAAELAQRATPAKVRSLRRHAMEED
NARARGDRAAMIRLSGEFHILLAEMAGNAILEKLIREMVSLTCLIITLYDRPGAPACAEHEHRQLTDAIEQRDAARASAL
MAEHLEHIEGSLDLSVPDSGAPDFYSIFSKG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29189; Mature: 29057

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATTSKKAAPGAAAKTPRRPASKATLKTAPKAAANAAPEESAGPEAAASEASATEAIYLS
CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
LLTAIMEHRLLAGTKLVEERLCEVTGASRARIRQVFARLAHEKLVTLVPNRGAFVSSPTV
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
DEAREVFQARRVVEPALAAELAQRATPAKVRSLRRHAMEEDNARARGDRAAMIRLSGEFH
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCE
ILLAEMAGNAILEKLIREMVSLTCLIITLYDRPGAPACAEHEHRQLTDAIEQRDAARASA
EHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LMAEHLEHIEGSLDLSVPDSGAPDFYSIFSKG
HHHHHHHHHCCCEEECCCCCCCCHHHHHHCCC
>Mature Secondary Structure 
ATTSKKAAPGAAAKTPRRPASKATLKTAPKAAANAAPEESAGPEAAASEASATEAIYLS
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
LLTAIMEHRLLAGTKLVEERLCEVTGASRARIRQVFARLAHEKLVTLVPNRGAFVSSPTV
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
DEAREVFQARRVVEPALAAELAQRATPAKVRSLRRHAMEEDNARARGDRAAMIRLSGEFH
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCE
ILLAEMAGNAILEKLIREMVSLTCLIITLYDRPGAPACAEHEHRQLTDAIEQRDAARASA
EHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LMAEHLEHIEGSLDLSVPDSGAPDFYSIFSKG
HHHHHHHHHCCCEEECCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA