Click here to switch to the map view.

The map label for this gene is ydfF [H]

Identifier: 116696403

GI number: 116696403

Start: 2789791

End: 2790480

Strand: Direct

Name: ydfF [H]

Synonym: H16_B2467

Alternate gene names: 116696403

Gene position: 2789791-2790480 (Clockwise)

Preceding gene: 116696395

Following gene: 116696404

Centisome position: 95.79

GC content: 75.36

Gene sequence:

>690_bases
ATGGATTACACCCCGGGCATCAGCCACCTCGCCGCCCTGCTCGCCGATCCCGGCCGCGCGGCCATGCTGTGGGCGCTGAT
GGACGGCAGCGCCCGGCCCGCCGGCGAGCTGGCGCTGATCGCCGGGCTGTCGGCCTCCTCCACCAGCGGCCACCTGGCCC
GCTTGACCGAAGGCGGGCTGCTGGTGGCCGAGACGCGCGGGCGCAACCGCTACTACCGCCTGGCCGCGCCGGAGATCGGC
GTGGCGATCGAGGCGCTGGCGTCGGCGTCGCTGGCCAGCCAGCCGCCGCGGCTGCGCGACGTGCCGGCATCGCGCACCGC
GCCACCGGCGCTGCGCCAGGCGCGCACCTGCTATGACCACCTGGCGGGCGAGCTGGCCGTGGGCCTGTTCGAGCGGATGA
CGCATTCGGGCTGGCTGATGCTGGACGGACAGCGCGTAGACCTGAGCGGCGACGGCGCGCAGGCGCTGGCGGGGCTGGGT
GTCGACGTGGAGGCGGCGCGGCGCAAGCGGCGCCAGTTTGCCTGCACCTGCCCGGACTGGAGCGAGCGCAAGCCGCACCT
GGGCGGCGCGCTTGGCGCGGCGCTGTTGGGCAGCCTGCTGTCGCGCGGCTGGGTCGAGCCTACGCGCACCTCGCGCGCGT
TGCGCGTGACACCGGCGGGCCAACGCGAGATCATTCGCATCGCGGCCTAG

Upstream 100 bases:

>100_bases
TGTCAAAAGAGGGTTTTCCCGCAGTGGCAGCGCCCGATTGCCAACTCGCTGGCGTGTGCCGCCTATACTCCGCATGCCAC
CTTTCATCCGGAGCCAAACC

Downstream 100 bases:

>100_bases
GAGACCGCAGCAAGCAACAGGAGAAAACAAGATGGCCACACCCCTGGACGACGACACGCAGGACGCGATTGCGCGTTTCT
TCGCCCTGATCAACCTTGGC

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MDYTPGISHLAALLADPGRAAMLWALMDGSARPAGELALIAGLSASSTSGHLARLTEGGLLVAETRGRNRYYRLAAPEIG
VAIEALASASLASQPPRLRDVPASRTAPPALRQARTCYDHLAGELAVGLFERMTHSGWLMLDGQRVDLSGDGAQALAGLG
VDVEAARRKRRQFACTCPDWSERKPHLGGALGAALLGSLLSRGWVEPTRTSRALRVTPAGQREIIRIAA

Sequences:

>Translated_229_residues
MDYTPGISHLAALLADPGRAAMLWALMDGSARPAGELALIAGLSASSTSGHLARLTEGGLLVAETRGRNRYYRLAAPEIG
VAIEALASASLASQPPRLRDVPASRTAPPALRQARTCYDHLAGELAVGLFERMTHSGWLMLDGQRVDLSGDGAQALAGLG
VDVEAARRKRRQFACTCPDWSERKPHLGGALGAALLGSLLSRGWVEPTRTSRALRVTPAGQREIIRIAA
>Mature_229_residues
MDYTPGISHLAALLADPGRAAMLWALMDGSARPAGELALIAGLSASSTSGHLARLTEGGLLVAETRGRNRYYRLAAPEIG
VAIEALASASLASQPPRLRDVPASRTAPPALRQARTCYDHLAGELAVGLFERMTHSGWLMLDGQRVDLSGDGAQALAGLG
VDVEAARRKRRQFACTCPDWSERKPHLGGALGAALLGSLLSRGWVEPTRTSRALRVTPAGQREIIRIAA

Specific function: Unknown

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 24191; Mature: 24191

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYTPGISHLAALLADPGRAAMLWALMDGSARPAGELALIAGLSASSTSGHLARLTEGGL
CCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEECCCCE
LVAETRGRNRYYRLAAPEIGVAIEALASASLASQPPRLRDVPASRTAPPALRQARTCYDH
EEEEECCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LAGELAVGLFERMTHSGWLMLDGQRVDLSGDGAQALAGLGVDVEAARRKRRQFACTCPDW
HHHHHHHHHHHHHCCCCEEEECCCEEEECCCCHHHHHHCCCCHHHHHHHHHCEEECCCCC
SERKPHLGGALGAALLGSLLSRGWVEPTRTSRALRVTPAGQREIIRIAA
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEECC
>Mature Secondary Structure
MDYTPGISHLAALLADPGRAAMLWALMDGSARPAGELALIAGLSASSTSGHLARLTEGGL
CCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEECCCCE
LVAETRGRNRYYRLAAPEIGVAIEALASASLASQPPRLRDVPASRTAPPALRQARTCYDH
EEEEECCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LAGELAVGLFERMTHSGWLMLDGQRVDLSGDGAQALAGLGVDVEAARRKRRQFACTCPDW
HHHHHHHHHHHHHCCCCEEEECCCEEEECCCCHHHHHHCCCCHHHHHHHHHCEEECCCCC
SERKPHLGGALGAALLGSLLSRGWVEPTRTSRALRVTPAGQREIIRIAA
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]