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The map label for this gene is yfdE [H]

Identifier: 116696374

GI number: 116696374

Start: 2752996

End: 2754228

Strand: Direct

Name: yfdE [H]

Synonym: H16_B2438

Alternate gene names: 116696374

Gene position: 2752996-2754228 (Clockwise)

Preceding gene: 116696373

Following gene: 116696375

Centisome position: 94.52

GC content: 59.77

Gene sequence:

>1233_bases
ATGAGTAGCGCAAGCACTTCGGCAGCGCAACGTCTACCGCTGAGCGGAATTCGAGTCATTGAAATGACTCACATGGTCAT
GGGTCCGGCATGCGGACTGATCCTTGCTGATCTAGGGGCGGAGGTAATCAAGGTCGAACCGCCCAAGGGTGACAGCACTC
GCCGGTTACTGGGGGCAGGCGCAGGGTTCTTTCGGGCATTCAACCGAAACAAGAAGAGCATCGCAGTCGAGGTGAGCGAA
AACAAGGACATGGAAGCCTTGCTGAAGCTGATTGACGGCGCCGACGTCTTTCTTGAGAACTTCAAGCCCGGGCGGATGAA
GGCTCTCGGCCTGGACTATGAAACGCTTCGCAAGCGCAACCCGAAGCTGATCTATGTCTCGCACAAAGGCTTTCTTAGCG
GACCATACGAGAAACGTCTCGCTCTCGACGAAGTTGTACAGATGATGGCGGGGCTAGCCTACATGACGGGCCCGGTCGGA
CGCCCTTTACGAGCTGGCAGTTCAGTCAATGACATTATGGGTGGCATGTTCGGCGCAATCGGCGTCCTGGCTGCCCTGTA
CGAACGCAACGCCACCGGCGCAGGCAAGGAGGTTCAGTCCGGCCTGTTCGAGAACTGCGTCCTCCTGTCTGCGCAGCATA
TGCAGCAGTACGCCGTGACCGGACAACCTGCGGCCCCGATGCCGGCACGGATCAGTGCCTGGGCAGTCTACGATGTGTTC
CAGCTGGCGGACGGTCACCAGATGTTTATTGCCGCCACGGGAGACGCCCAGTGGCGGACGCTTTGCCACATCATCGGCAG
GAACGATCTCCTTGAGGACCAGCGCCTGCTTTCCAACAACGACAGGGTACTGGCAAGAGATTGGCTGTTGCCGACGCTTG
GAGAAACGCTGAAGGCCTTCCGTGCCGAAATGCTGACGGCTGCTTTTGAAGCAGGCAACATACCGTTTGCTGAGATCACC
CGTCCCGAAGAGCTCTTCGACGACCCGCATCTCAAAGAGAGTGGCGGGCTGGCGAAGCTTCAGGTCGATGACGGCAGCAC
CACCGAAGTTCCCCTGCTGCCGTTCTCGCTGGATGGCGCACGGCTACAGCCTCGCATGCCAATCGCGCGCATTGGCGAGC
ACACCCGTGAGGTTCTGGAATCTGCCGGTTGTGCCGCAAGCGACGTGGATGCCATCGTGGCCAAGCACCGCGGGCCCGGG
CTCGCCCAACCGGCGGCTGCCCATATGGATTGA

Upstream 100 bases:

>100_bases
AGGCAAGCTCTGACCCCTGAGCGTTTGTGGGAATTTGAGCTTGCCCCGGGCGGCAGCAGGGAGCAGTTCCCCAAAAGCTC
GGCGCATTCGGAGCACATAA

Downstream 100 bases:

>100_bases
CCCTGCCGCCACGTGATACCCAGCATGGTGACGCAATCCATTCGTGACCGTAGAAGCCTGGCGACGTTCAGGCTGGTTCA
GAGATATCGAGAACAGGAGA

Product: acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MSSASTSAAQRLPLSGIRVIEMTHMVMGPACGLILADLGAEVIKVEPPKGDSTRRLLGAGAGFFRAFNRNKKSIAVEVSE
NKDMEALLKLIDGADVFLENFKPGRMKALGLDYETLRKRNPKLIYVSHKGFLSGPYEKRLALDEVVQMMAGLAYMTGPVG
RPLRAGSSVNDIMGGMFGAIGVLAALYERNATGAGKEVQSGLFENCVLLSAQHMQQYAVTGQPAAPMPARISAWAVYDVF
QLADGHQMFIAATGDAQWRTLCHIIGRNDLLEDQRLLSNNDRVLARDWLLPTLGETLKAFRAEMLTAAFEAGNIPFAEIT
RPEELFDDPHLKESGGLAKLQVDDGSTTEVPLLPFSLDGARLQPRMPIARIGEHTREVLESAGCAASDVDAIVAKHRGPG
LAQPAAAHMD

Sequences:

>Translated_410_residues
MSSASTSAAQRLPLSGIRVIEMTHMVMGPACGLILADLGAEVIKVEPPKGDSTRRLLGAGAGFFRAFNRNKKSIAVEVSE
NKDMEALLKLIDGADVFLENFKPGRMKALGLDYETLRKRNPKLIYVSHKGFLSGPYEKRLALDEVVQMMAGLAYMTGPVG
RPLRAGSSVNDIMGGMFGAIGVLAALYERNATGAGKEVQSGLFENCVLLSAQHMQQYAVTGQPAAPMPARISAWAVYDVF
QLADGHQMFIAATGDAQWRTLCHIIGRNDLLEDQRLLSNNDRVLARDWLLPTLGETLKAFRAEMLTAAFEAGNIPFAEIT
RPEELFDDPHLKESGGLAKLQVDDGSTTEVPLLPFSLDGARLQPRMPIARIGEHTREVLESAGCAASDVDAIVAKHRGPG
LAQPAAAHMD
>Mature_409_residues
SSASTSAAQRLPLSGIRVIEMTHMVMGPACGLILADLGAEVIKVEPPKGDSTRRLLGAGAGFFRAFNRNKKSIAVEVSEN
KDMEALLKLIDGADVFLENFKPGRMKALGLDYETLRKRNPKLIYVSHKGFLSGPYEKRLALDEVVQMMAGLAYMTGPVGR
PLRAGSSVNDIMGGMFGAIGVLAALYERNATGAGKEVQSGLFENCVLLSAQHMQQYAVTGQPAAPMPARISAWAVYDVFQ
LADGHQMFIAATGDAQWRTLCHIIGRNDLLEDQRLLSNNDRVLARDWLLPTLGETLKAFRAEMLTAAFEAGNIPFAEITR
PEELFDDPHLKESGGLAKLQVDDGSTTEVPLLPFSLDGARLQPRMPIARIGEHTREVLESAGCAASDVDAIVAKHRGPGL
AQPAAAHMD

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=381, Percent_Identity=30.1837270341207, Blast_Score=185, Evalue=9e-47,
Organism=Homo sapiens, GI300863124, Length=336, Percent_Identity=32.4404761904762, Blast_Score=177, Evalue=1e-44,
Organism=Homo sapiens, GI300863126, Length=374, Percent_Identity=25.9358288770053, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI13376042, Length=336, Percent_Identity=28.5714285714286, Blast_Score=132, Evalue=6e-31,
Organism=Homo sapiens, GI42794625, Length=387, Percent_Identity=26.6149870801034, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI266456254, Length=387, Percent_Identity=26.6149870801034, Blast_Score=112, Evalue=8e-25,
Organism=Homo sapiens, GI266458393, Length=270, Percent_Identity=27.7777777777778, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI266458397, Length=245, Percent_Identity=28.5714285714286, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI266458395, Length=134, Percent_Identity=32.8358208955224, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI42822893, Length=120, Percent_Identity=34.1666666666667, Blast_Score=75, Evalue=9e-14,
Organism=Escherichia coli, GI87082093, Length=344, Percent_Identity=31.9767441860465, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1788717, Length=413, Percent_Identity=28.0871670702179, Blast_Score=118, Evalue=9e-28,
Organism=Escherichia coli, GI1786222, Length=399, Percent_Identity=24.812030075188, Blast_Score=93, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=209, Percent_Identity=27.7511961722488, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115535051, Length=297, Percent_Identity=22.8956228956229, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24648431, Length=379, Percent_Identity=34.3007915567282, Blast_Score=198, Evalue=5e-51,
Organism=Drosophila melanogaster, GI24585488, Length=248, Percent_Identity=26.6129032258064, Blast_Score=87, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44264; Mature: 44132

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSASTSAAQRLPLSGIRVIEMTHMVMGPACGLILADLGAEVIKVEPPKGDSTRRLLGAG
CCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCC
AGFFRAFNRNKKSIAVEVSENKDMEALLKLIDGADVFLENFKPGRMKALGLDYETLRKRN
HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHCCCCCCEEEECCCHHHHHCCC
PKLIYVSHKGFLSGPYEKRLALDEVVQMMAGLAYMTGPVGRPLRAGSSVNDIMGGMFGAI
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
GVLAALYERNATGAGKEVQSGLFENCVLLSAQHMQQYAVTGQPAAPMPARISAWAVYDVF
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
QLADGHQMFIAATGDAQWRTLCHIIGRNDLLEDQRLLSNNDRVLARDWLLPTLGETLKAF
HHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEHHHCCHHHHHHHHHH
RAEMLTAAFEAGNIPFAEITRPEELFDDPHLKESGGLAKLQVDDGSTTEVPLLPFSLDGA
HHHHHHHHHHCCCCCHHHCCCHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCC
RLQPRMPIARIGEHTREVLESAGCAASDVDAIVAKHRGPGLAQPAAAHMD
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHCCC
>Mature Secondary Structure 
SSASTSAAQRLPLSGIRVIEMTHMVMGPACGLILADLGAEVIKVEPPKGDSTRRLLGAG
CCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCC
AGFFRAFNRNKKSIAVEVSENKDMEALLKLIDGADVFLENFKPGRMKALGLDYETLRKRN
HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHCCCCCCEEEECCCHHHHHCCC
PKLIYVSHKGFLSGPYEKRLALDEVVQMMAGLAYMTGPVGRPLRAGSSVNDIMGGMFGAI
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
GVLAALYERNATGAGKEVQSGLFENCVLLSAQHMQQYAVTGQPAAPMPARISAWAVYDVF
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
QLADGHQMFIAATGDAQWRTLCHIIGRNDLLEDQRLLSNNDRVLARDWLLPTLGETLKAF
HHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEHHHCCHHHHHHHHHH
RAEMLTAAFEAGNIPFAEITRPEELFDDPHLKESGGLAKLQVDDGSTTEVPLLPFSLDGA
HHHHHHHHHHCCCCCHHHCCCHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCC
RLQPRMPIARIGEHTREVLESAGCAASDVDAIVAKHRGPGLAQPAAAHMD
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]