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The map label for this gene is ybhD [H]

Identifier: 116696373

GI number: 116696373

Start: 2751899

End: 2752792

Strand: Direct

Name: ybhD [H]

Synonym: H16_B2437

Alternate gene names: 116696373

Gene position: 2751899-2752792 (Clockwise)

Preceding gene: 116696372

Following gene: 116696374

Centisome position: 94.49

GC content: 58.17

Gene sequence:

>894_bases
ATGTGGCAACCGGATCCCGTCACTCTTCGGCTCTTCATCGCGGTCTGTGAGGAAGGCAGCATCGCCCGTGCCAGCGAGCG
AGAGGGCATGGCTGCGGCAGCAGTGAGCAAGCGTGTGGCCGATATTGAGCGCGCACTCGGCACGCAACTACTGATCCGCA
GCTCACGTGGCGTGAACCCCACGCCGGCGGGAGACATCCTTCTTCGGCATGCCAGGCACCTGATGCAGGGTGTTGAACAA
ATGCAATCCGACCTGAGCGAGTTCTCCTCTGGAGTCCGGGGCCTGGTCCGGGTTCTTGCGAACATTTCCTCCATCGTTGA
GTTTCTGCCTGAAGAGATCGCGTCCTTTCTGCAGACCCACGAGAACATTCACGTAGTTCTTGAGGAACGCGCAAGTTCGG
AGATCGTCAGAGGCATTGCCGAGGGCAGCGCAGACATTGGCATCTGTCGTGACTTTGTGGCGGAACGGGAAGTAGAAATG
CTGCCATTCCGCGCGGATCACTTCTGTGTCGTCGTGCATCGCAGCCACCCTCTGGCGAGCCGGAGCGAGGTATCTTTTGC
GGACACGCTCGGCTACGAGCATATTGGCTTCGCACCCAACGTCGCCCTGCATGCGCTTACCCGCAGAGTTGCATATGAGA
ACAGGCGGACCATCAGGTATCGGGCCAATGTCACTACGTTCGACGCGGCGTGTCGGCTGATTCACCTAAATCTAGGCCTT
GCCGTGCTGCCTGCAGAAGCCGTAGAAAAGTACCAGCCGCTCTACGATCTCTGCGTAATCAAGTTGATCGATGCGTGGGC
GACACGAAAATTCGTCATTTGTGTTCGCCACGCCGACCAACTCTCTTCCGCTGCGAACCGATTTCTTGCGCATTTGACGC
GAACACTGCCCTAG

Upstream 100 bases:

>100_bases
CGCCGCGCAAGATGTGCAATGATTCGCTGGACAGCCAGCGGCAAGCACATCCCTGAGGCTTCCGTTTTCTCATTCACCTG
ACGCTCAGGATTCTTCAATA

Downstream 100 bases:

>100_bases
GGAAATCCCGGCAAGGTTACGGCAAGCGGGGGCCGCCGGTTCGACCATCGCGTAGGACGATGGCTGCCATCGTCGGAATG
GGATTGCTGCAGGCCCCCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MWQPDPVTLRLFIAVCEEGSIARASEREGMAAAAVSKRVADIERALGTQLLIRSSRGVNPTPAGDILLRHARHLMQGVEQ
MQSDLSEFSSGVRGLVRVLANISSIVEFLPEEIASFLQTHENIHVVLEERASSEIVRGIAEGSADIGICRDFVAEREVEM
LPFRADHFCVVVHRSHPLASRSEVSFADTLGYEHIGFAPNVALHALTRRVAYENRRTIRYRANVTTFDAACRLIHLNLGL
AVLPAEAVEKYQPLYDLCVIKLIDAWATRKFVICVRHADQLSSAANRFLAHLTRTLP

Sequences:

>Translated_297_residues
MWQPDPVTLRLFIAVCEEGSIARASEREGMAAAAVSKRVADIERALGTQLLIRSSRGVNPTPAGDILLRHARHLMQGVEQ
MQSDLSEFSSGVRGLVRVLANISSIVEFLPEEIASFLQTHENIHVVLEERASSEIVRGIAEGSADIGICRDFVAEREVEM
LPFRADHFCVVVHRSHPLASRSEVSFADTLGYEHIGFAPNVALHALTRRVAYENRRTIRYRANVTTFDAACRLIHLNLGL
AVLPAEAVEKYQPLYDLCVIKLIDAWATRKFVICVRHADQLSSAANRFLAHLTRTLP
>Mature_297_residues
MWQPDPVTLRLFIAVCEEGSIARASEREGMAAAAVSKRVADIERALGTQLLIRSSRGVNPTPAGDILLRHARHLMQGVEQ
MQSDLSEFSSGVRGLVRVLANISSIVEFLPEEIASFLQTHENIHVVLEERASSEIVRGIAEGSADIGICRDFVAEREVEM
LPFRADHFCVVVHRSHPLASRSEVSFADTLGYEHIGFAPNVALHALTRRVAYENRRTIRYRANVTTFDAACRLIHLNLGL
AVLPAEAVEKYQPLYDLCVIKLIDAWATRKFVICVRHADQLSSAANRFLAHLTRTLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=285, Percent_Identity=24.9122807017544, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1786713, Length=185, Percent_Identity=29.7297297297297, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1787879, Length=296, Percent_Identity=23.3108108108108, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788748, Length=284, Percent_Identity=27.112676056338, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI157672245, Length=179, Percent_Identity=25.6983240223464, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786401, Length=140, Percent_Identity=31.4285714285714, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787601, Length=241, Percent_Identity=23.6514522821577, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787530, Length=299, Percent_Identity=24.7491638795987, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788297, Length=131, Percent_Identity=35.1145038167939, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788887, Length=191, Percent_Identity=25.6544502617801, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789506, Length=177, Percent_Identity=28.8135593220339, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI87081904, Length=174, Percent_Identity=26.4367816091954, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI2367136, Length=150, Percent_Identity=28, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33026; Mature: 33026

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWQPDPVTLRLFIAVCEEGSIARASEREGMAAAAVSKRVADIERALGTQLLIRSSRGVNP
CCCCCCHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TPAGDILLRHARHLMQGVEQMQSDLSEFSSGVRGLVRVLANISSIVEFLPEEIASFLQTH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ENIHVVLEERASSEIVRGIAEGSADIGICRDFVAEREVEMLPFRADHFCVVVHRSHPLAS
CCCEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCCCCCCEEEEEECCCCCCC
RSEVSFADTLGYEHIGFAPNVALHALTRRVAYENRRTIRYRANVTTFDAACRLIHLNLGL
CCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHEEECCC
AVLPAEAVEKYQPLYDLCVIKLIDAWATRKFVICVRHADQLSSAANRFLAHLTRTLP
EEECHHHHHHHCHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MWQPDPVTLRLFIAVCEEGSIARASEREGMAAAAVSKRVADIERALGTQLLIRSSRGVNP
CCCCCCHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TPAGDILLRHARHLMQGVEQMQSDLSEFSSGVRGLVRVLANISSIVEFLPEEIASFLQTH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ENIHVVLEERASSEIVRGIAEGSADIGICRDFVAEREVEMLPFRADHFCVVVHRSHPLAS
CCCEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCCCCCCEEEEEECCCCCCC
RSEVSFADTLGYEHIGFAPNVALHALTRRVAYENRRTIRYRANVTTFDAACRLIHLNLGL
CCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHEEECCC
AVLPAEAVEKYQPLYDLCVIKLIDAWATRKFVICVRHADQLSSAANRFLAHLTRTLP
EEECHHHHHHHCHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]