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The map label for this gene is soxR [H]

Identifier: 116696255

GI number: 116696255

Start: 2628530

End: 2629084

Strand: Direct

Name: soxR [H]

Synonym: H16_B2319

Alternate gene names: 116696255

Gene position: 2628530-2629084 (Clockwise)

Preceding gene: 116696253

Following gene: 116696257

Centisome position: 90.25

GC content: 68.83

Gene sequence:

>555_bases
ATGGGCATTCCTCCGTTCCACTGGTGTCTTCCACTGCCGATGGCCTCCGCGAACAAGCCCCCCTCACCGCGCCGGCGCCG
TGCCGCGCCTTCCGAAGAACTGCTCTCCGTCGGCGAAGTCGCCGCGCGCACGGGCATTGCCGTATCCGCCCTGCATTTCT
ATGAATCGCGTGGCCTGATCGCCAGCACCCGCAGCGGCGGCAACCAGCGCCGCTATGCGCGTGCCGTGCTGCGGCGCCTG
GCCGTGATCCGCGTGGCGCAGCGCATGGGGTTGCCGCTGGCGGTGATCGCCGATGCCATGCAGAAGCTGCCGGACGGGCG
TGCGCCCACCGCGGCCGACTGGCGCCGGCTGTCGGCGAGCTGGCGCGATGACCTGGATGAACGGATCCGGACGCTCACGC
AATTGCGTGACCAGCTGGATGGGTGTATCGGGTGCGGGTGTCTGTCGTTGAAGGCGTGCCCGTTGCGGAACCCGCATGAC
GCGCTGGCCGGGGAAGGGCCGGGGCCGCATTTCCCGCCTACTGCAATGTCTGCAGGTAAGCCAGCAGATCGCTGA

Upstream 100 bases:

>100_bases
AACATGGTCATCAGCTCTGTATTTGAGGCGTGGCGAACAATGGAGTCGCAAGTATCAAACCTCAACCTAAATTGAGGTCA
AGCGCAGCCTTGGTGTTAGC

Downstream 100 bases:

>100_bases
TCTGCTTGTCGTCACTGAGCCCCCAGAAGCGCATCTTGGTGCCAGGCACGACCTTGCCGGGCGAATGGATGAAGGCACGC
AGCGTGTCATGCGACCACAC

Product: SoxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MGIPPFHWCLPLPMASANKPPSPRRRRAAPSEELLSVGEVAARTGIAVSALHFYESRGLIASTRSGGNQRRYARAVLRRL
AVIRVAQRMGLPLAVIADAMQKLPDGRAPTAADWRRLSASWRDDLDERIRTLTQLRDQLDGCIGCGCLSLKACPLRNPHD
ALAGEGPGPHFPPTAMSAGKPADR

Sequences:

>Translated_184_residues
MGIPPFHWCLPLPMASANKPPSPRRRRAAPSEELLSVGEVAARTGIAVSALHFYESRGLIASTRSGGNQRRYARAVLRRL
AVIRVAQRMGLPLAVIADAMQKLPDGRAPTAADWRRLSASWRDDLDERIRTLTQLRDQLDGCIGCGCLSLKACPLRNPHD
ALAGEGPGPHFPPTAMSAGKPADR
>Mature_183_residues
GIPPFHWCLPLPMASANKPPSPRRRRAAPSEELLSVGEVAARTGIAVSALHFYESRGLIASTRSGGNQRRYARAVLRRLA
VIRVAQRMGLPLAVIADAMQKLPDGRAPTAADWRRLSASWRDDLDERIRTLTQLRDQLDGCIGCGCLSLKACPLRNPHDA
LAGEGPGPHFPPTAMSAGKPADR

Specific function: Activates the transcription of the soxS gene which itself controls the superoxide response regulon. SoxR contains a 2Fe-2S iron-sulfur cluster that may act as a redox sensor system that recognizes superoxide. The variable redox state of the Fe-S cluster i

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790498, Length=135, Percent_Identity=62.2222222222222, Blast_Score=181, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR010211
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 19931; Mature: 19800

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIPPFHWCLPLPMASANKPPSPRRRRAAPSEELLSVGEVAARTGIAVSALHFYESRGLI
CCCCCCHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
ASTRSGGNQRRYARAVLRRLAVIRVAQRMGLPLAVIADAMQKLPDGRAPTAADWRRLSAS
EECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
WRDDLDERIRTLTQLRDQLDGCIGCGCLSLKACPLRNPHDALAGEGPGPHFPPTAMSAGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCC
PADR
CCCC
>Mature Secondary Structure 
GIPPFHWCLPLPMASANKPPSPRRRRAAPSEELLSVGEVAARTGIAVSALHFYESRGLI
CCCCCHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
ASTRSGGNQRRYARAVLRRLAVIRVAQRMGLPLAVIADAMQKLPDGRAPTAADWRRLSAS
EECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
WRDDLDERIRTLTQLRDQLDGCIGCGCLSLKACPLRNPHDALAGEGPGPHFPPTAMSAGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCC
PADR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045804; 10984043 [H]