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The map label for this gene is yfdE [H]

Identifier: 116696146

GI number: 116696146

Start: 2509317

End: 2510555

Strand: Direct

Name: yfdE [H]

Synonym: H16_B2210

Alternate gene names: 116696146

Gene position: 2509317-2510555 (Clockwise)

Preceding gene: 116696144

Following gene: 116696147

Centisome position: 86.16

GC content: 67.8

Gene sequence:

>1239_bases
ATGTTCTCTGTTAAAGATCGTCATTCTGTTGTACAGAACATGAAAAAGCCACTGCGCCATATCCGCGTGCTCGACCTGAC
CAATGTGCTGGCCGGGCCGTTCTGCTGCCACCAGCTTGCCCACCTGGGCGCCGAAGTCATCAAGGTGGAAACCCCCGGCA
CCGGCGACCTGGCCCGGCAGCTGGGCGCCGATGCCGAGCTGAACCAGCGCCTGATGGGCGTGTCGTTCCTGGCCCAGAAC
CCAGGCAAGCAGTCGGTCACGCTCAACCTGAAGCACGCGCGCGGCAAGGAGGTGTTCCGCAAGCTGGTGCAAAGCGCCGA
CGTGCTGGTGGAGAACTTCCGCCCCGGCGTGATGGACCGGCTCGGGCTGGGCTACGAGACCCTGAAGCAGGACAACCCGC
GCCTGATCTACTGCGCGATCTCGGGCTTTGGCCAGGACGGGCCGCTGGCCGGGCTGCCGGCCTATGACCAGATCATCCAG
GGCATGGCCGGCGTGATGAGCATTACCGGCGATGCGCAGAGCGCACCGTTGCGGGTCGGCTATCCGGTCTCGGACACCAT
CGGCGGGCTGACCGCGGCGCTGGCGGTATCGGCGGCGCTGGCGGACCACCAGCGCACCGAAGGCTATTTCGTCGACGTAT
CGATGCTGGAAGCCACGCTGGCCACCATGGGCTGGGTGGTATCCAACCACCTGATCGCCGGCAAGGTGCCGGCGCCGATG
GGCAACGAGAACATGACCGCCAGCCCTTCCGGCACTTTCCGCACCGCGGACGGGCTGCTCAATATCGCCGCCAACAAGCA
GGAACAGTTTGAAGCCGTGTGCCGCGTGCTGGGCCGCCCCGAGCTGGCCGCCGATCCGCGCTTCGCGCAGCGCCAGGCGC
GGCTGGCCAACCGGGGCGAACTGACACAGGCGCTGGAAGCAGAGCTGGCGAAGAAGCCGGCCACCGAATGGTGGCCGCTG
CTGACCGAGGCCGGCGTGCCCGCCGGCCCGGTGCTGGACGTGCCACAGACGCTGGCGCATCCGCAGGTGCGCGAGCGCGG
CATGATCGGCGAATTTGCCGATGCGCCCGGCGTGGGCCGCGATATCCGCGTGGTGCGCACCGGCTTCAAGCTCAACCGCG
AGGCCCCGGCCGTGGACACGCCGCCGCCGGAGCTGGGCCAGCATACGCGGCAGGTGCTGGCCAGCCTGGGCTACAGCGAT
GCGGACATCGACCAACTGAGCGAGGAGCGCGCGATATGA

Upstream 100 bases:

>100_bases
GCCCGCGCGCCAGCGGGCCGCGCGGACGGGGCGCCATTGTATGGCAGGTGCCGGCCAGGCGCCCGGCTTGACACGCCCAA
ACGCGGCTCCTATCCTCCGC

Downstream 100 bases:

>100_bases
GCGGCATCGAAACCAGCGGCCAGCCCCGGGATGACGCCATGGACCCGGGCCAGCGCCTGTCGCAGGACTGGTGGCGCACC
GGCATCATCGACATGCGCCC

Product: acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MFSVKDRHSVVQNMKKPLRHIRVLDLTNVLAGPFCCHQLAHLGAEVIKVETPGTGDLARQLGADAELNQRLMGVSFLAQN
PGKQSVTLNLKHARGKEVFRKLVQSADVLVENFRPGVMDRLGLGYETLKQDNPRLIYCAISGFGQDGPLAGLPAYDQIIQ
GMAGVMSITGDAQSAPLRVGYPVSDTIGGLTAALAVSAALADHQRTEGYFVDVSMLEATLATMGWVVSNHLIAGKVPAPM
GNENMTASPSGTFRTADGLLNIAANKQEQFEAVCRVLGRPELAADPRFAQRQARLANRGELTQALEAELAKKPATEWWPL
LTEAGVPAGPVLDVPQTLAHPQVRERGMIGEFADAPGVGRDIRVVRTGFKLNREAPAVDTPPPELGQHTRQVLASLGYSD
ADIDQLSEERAI

Sequences:

>Translated_412_residues
MFSVKDRHSVVQNMKKPLRHIRVLDLTNVLAGPFCCHQLAHLGAEVIKVETPGTGDLARQLGADAELNQRLMGVSFLAQN
PGKQSVTLNLKHARGKEVFRKLVQSADVLVENFRPGVMDRLGLGYETLKQDNPRLIYCAISGFGQDGPLAGLPAYDQIIQ
GMAGVMSITGDAQSAPLRVGYPVSDTIGGLTAALAVSAALADHQRTEGYFVDVSMLEATLATMGWVVSNHLIAGKVPAPM
GNENMTASPSGTFRTADGLLNIAANKQEQFEAVCRVLGRPELAADPRFAQRQARLANRGELTQALEAELAKKPATEWWPL
LTEAGVPAGPVLDVPQTLAHPQVRERGMIGEFADAPGVGRDIRVVRTGFKLNREAPAVDTPPPELGQHTRQVLASLGYSD
ADIDQLSEERAI
>Mature_412_residues
MFSVKDRHSVVQNMKKPLRHIRVLDLTNVLAGPFCCHQLAHLGAEVIKVETPGTGDLARQLGADAELNQRLMGVSFLAQN
PGKQSVTLNLKHARGKEVFRKLVQSADVLVENFRPGVMDRLGLGYETLKQDNPRLIYCAISGFGQDGPLAGLPAYDQIIQ
GMAGVMSITGDAQSAPLRVGYPVSDTIGGLTAALAVSAALADHQRTEGYFVDVSMLEATLATMGWVVSNHLIAGKVPAPM
GNENMTASPSGTFRTADGLLNIAANKQEQFEAVCRVLGRPELAADPRFAQRQARLANRGELTQALEAELAKKPATEWWPL
LTEAGVPAGPVLDVPQTLAHPQVRERGMIGEFADAPGVGRDIRVVRTGFKLNREAPAVDTPPPELGQHTRQVLASLGYSD
ADIDQLSEERAI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=396, Percent_Identity=35.3535353535354, Blast_Score=255, Evalue=5e-68,
Organism=Homo sapiens, GI300863124, Length=420, Percent_Identity=33.5714285714286, Blast_Score=245, Evalue=6e-65,
Organism=Homo sapiens, GI300863126, Length=395, Percent_Identity=31.6455696202532, Blast_Score=212, Evalue=7e-55,
Organism=Homo sapiens, GI13376042, Length=420, Percent_Identity=30.2380952380952, Blast_Score=195, Evalue=7e-50,
Organism=Homo sapiens, GI266456254, Length=400, Percent_Identity=30.75, Blast_Score=161, Evalue=1e-39,
Organism=Homo sapiens, GI42794625, Length=400, Percent_Identity=30.75, Blast_Score=160, Evalue=1e-39,
Organism=Homo sapiens, GI266458393, Length=266, Percent_Identity=34.9624060150376, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI266458397, Length=257, Percent_Identity=35.408560311284, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI42822893, Length=147, Percent_Identity=39.4557823129252, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI266458395, Length=139, Percent_Identity=41.0071942446043, Blast_Score=103, Evalue=4e-22,
Organism=Escherichia coli, GI87082093, Length=338, Percent_Identity=39.3491124260355, Blast_Score=246, Evalue=1e-66,
Organism=Escherichia coli, GI1788717, Length=426, Percent_Identity=31.924882629108, Blast_Score=185, Evalue=6e-48,
Organism=Escherichia coli, GI1786222, Length=400, Percent_Identity=27, Blast_Score=111, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI115535051, Length=379, Percent_Identity=26.1213720316623, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=346, Percent_Identity=24.8554913294798, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24648431, Length=400, Percent_Identity=36.75, Blast_Score=248, Evalue=7e-66,
Organism=Drosophila melanogaster, GI24585488, Length=341, Percent_Identity=29.9120234604106, Blast_Score=128, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44296; Mature: 44296

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSVKDRHSVVQNMKKPLRHIRVLDLTNVLAGPFCCHQLAHLGAEVIKVETPGTGDLARQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
LGADAELNQRLMGVSFLAQNPGKQSVTLNLKHARGKEVFRKLVQSADVLVENFRPGVMDR
HCCCHHHHHHHHHHHHHHCCCCCCEEEEEECHHCHHHHHHHHHHHHHHHHHHCCCCHHHH
LGLGYETLKQDNPRLIYCAISGFGQDGPLAGLPAYDQIIQGMAGVMSITGDAQSAPLRVG
HCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEC
YPVSDTIGGLTAALAVSAALADHQRTEGYFVDVSMLEATLATMGWVVSNHLIAGKVPAPM
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCEEECCCCCCC
GNENMTASPSGTFRTADGLLNIAANKQEQFEAVCRVLGRPELAADPRFAQRQARLANRGE
CCCCCCCCCCCCEECCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
LTQALEAELAKKPATEWWPLLTEAGVPAGPVLDVPQTLAHPQVRERGMIGEFADAPGVGR
HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCCCCC
DIRVVRTGFKLNREAPAVDTPPPELGQHTRQVLASLGYSDADIDQLSEERAI
CCEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MFSVKDRHSVVQNMKKPLRHIRVLDLTNVLAGPFCCHQLAHLGAEVIKVETPGTGDLARQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
LGADAELNQRLMGVSFLAQNPGKQSVTLNLKHARGKEVFRKLVQSADVLVENFRPGVMDR
HCCCHHHHHHHHHHHHHHCCCCCCEEEEEECHHCHHHHHHHHHHHHHHHHHHCCCCHHHH
LGLGYETLKQDNPRLIYCAISGFGQDGPLAGLPAYDQIIQGMAGVMSITGDAQSAPLRVG
HCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEC
YPVSDTIGGLTAALAVSAALADHQRTEGYFVDVSMLEATLATMGWVVSNHLIAGKVPAPM
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCEEECCCCCCC
GNENMTASPSGTFRTADGLLNIAANKQEQFEAVCRVLGRPELAADPRFAQRQARLANRGE
CCCCCCCCCCCCEECCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
LTQALEAELAKKPATEWWPLLTEAGVPAGPVLDVPQTLAHPQVRERGMIGEFADAPGVGR
HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCCCCC
DIRVVRTGFKLNREAPAVDTPPPELGQHTRQVLASLGYSDADIDQLSEERAI
CCEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]