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The map label for this gene is ykoW [H]

Identifier: 116695992

GI number: 116695992

Start: 2313931

End: 2314719

Strand: Direct

Name: ykoW [H]

Synonym: H16_B2056

Alternate gene names: 116695992

Gene position: 2313931-2314719 (Clockwise)

Preceding gene: 116695987

Following gene: 116695993

Centisome position: 79.45

GC content: 68.57

Gene sequence:

>789_bases
ATGTTTGTCGGTTTCCAGCCTGTTTCCGGCGCCCTGGTGCCGTTTGCCTATGACTGGCCGATGGTGGGCCTGTCGTTCCT
GATCTCTGTCTGCGGCGCCTACGTGGGCCTGCGCTGGTCGCGGCGCGTGCGCATGCCCGACGGCCGCCTGGACGTGGACC
GGCTGTTGTGCGCCAGCGTGGCGCTGGGCGGCGGCGCGGTCTGGTCGATGCATTTCATCGGCATGGTGGCCTACCAGACC
CCGACGCACCGCGAGTTCGGACTGTTCATGACGCTGGCTTCGCTGGTGGTCGTGATGGTGCTGGCCGGCGCCGGACTGGC
GATCGCCTCGCGCCCGCGCGGCAGCCGTACCGACAACGTGATCAAGGGCGGCGTGCTGACCGGGCTGGGCGTGGTGGCGA
TGCACTACACCGGCATGGCCGCGATCCGCTCCAACACCCGCTTCGACTGGGACCTGGCCATCATCGGGCTGTCGGTGGTG
ATCGCCGTGGTGGTGTCGGTGGTGGCGCTGTGGCTGGCCACCACGGTGAAGACCCGCGGCAAGCAGCTGGCAGCTGCAGT
GGTCATGGGCGTCGCCGTCTGCGGCATGCACTACACCGGCATGTCTGCGGGCACCATGATCTGCACCAGCCCGACCTACG
CGCCCAGCCTGTTCGCCATCGAGGGCGACAGCATCGGCTATGCGGTGTTCGGCCTGACGCTGATCACGCTGCTCGTGATC
CTGGTGGTGGAAGCCACCCGCACCGGGGCTGAAGTCGTGCCGGTGGCGCGCACGCGCGATGCCGCCTGA

Upstream 100 bases:

>100_bases
TACTCGGCACGGGACCACCGCGTCCTAGGCCGGCTGCCGGAAGCAATGCCCGGCATGCGCGTGCGCCCTTCAGTCGCAGT
CAAAACGAGGAGGTGGGGTC

Downstream 100 bases:

>100_bases
CATCGGCTGAACCGGCCGCGGGGACATTCCCGCACATTCCTCCTGGGAACACACCCGGCGCGCTGCATGAACGCGGCCGC
CGGGTTAAGCTTGCGGTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MFVGFQPVSGALVPFAYDWPMVGLSFLISVCGAYVGLRWSRRVRMPDGRLDVDRLLCASVALGGGAVWSMHFIGMVAYQT
PTHREFGLFMTLASLVVVMVLAGAGLAIASRPRGSRTDNVIKGGVLTGLGVVAMHYTGMAAIRSNTRFDWDLAIIGLSVV
IAVVVSVVALWLATTVKTRGKQLAAAVVMGVAVCGMHYTGMSAGTMICTSPTYAPSLFAIEGDSIGYAVFGLTLITLLVI
LVVEATRTGAEVVPVARTRDAA

Sequences:

>Translated_262_residues
MFVGFQPVSGALVPFAYDWPMVGLSFLISVCGAYVGLRWSRRVRMPDGRLDVDRLLCASVALGGGAVWSMHFIGMVAYQT
PTHREFGLFMTLASLVVVMVLAGAGLAIASRPRGSRTDNVIKGGVLTGLGVVAMHYTGMAAIRSNTRFDWDLAIIGLSVV
IAVVVSVVALWLATTVKTRGKQLAAAVVMGVAVCGMHYTGMSAGTMICTSPTYAPSLFAIEGDSIGYAVFGLTLITLLVI
LVVEATRTGAEVVPVARTRDAA
>Mature_262_residues
MFVGFQPVSGALVPFAYDWPMVGLSFLISVCGAYVGLRWSRRVRMPDGRLDVDRLLCASVALGGGAVWSMHFIGMVAYQT
PTHREFGLFMTLASLVVVMVLAGAGLAIASRPRGSRTDNVIKGGVLTGLGVVAMHYTGMAAIRSNTRFDWDLAIIGLSVV
IAVVVSVVALWLATTVKTRGKQLAAAVVMGVAVCGMHYTGMSAGTMICTSPTYAPSLFAIEGDSIGYAVFGLTLITLLVI
LVVEATRTGAEVVPVARTRDAA

Specific function: Probable signaling protein whose physiological role is not yet known [H]

COG id: COG3300

COG function: function code T; MHYT domain (predicted integral membrane sensor domain)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 27576; Mature: 27576

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS50924 MHYT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVGFQPVSGALVPFAYDWPMVGLSFLISVCGAYVGLRWSRRVRMPDGRLDVDRLLCASV
CCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCHHHCEEECCCCCCCHHHHHHHHH
ALGGGAVWSMHFIGMVAYQTPTHREFGLFMTLASLVVVMVLAGAGLAIASRPRGSRTDNV
HCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCH
IKGGVLTGLGVVAMHYTGMAAIRSNTRFDWDLAIIGLSVVIAVVVSVVALWLATTVKTRG
HCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQLAAAVVMGVAVCGMHYTGMSAGTMICTSPTYAPSLFAIEGDSIGYAVFGLTLITLLVI
HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
LVVEATRTGAEVVPVARTRDAA
HHHHCCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MFVGFQPVSGALVPFAYDWPMVGLSFLISVCGAYVGLRWSRRVRMPDGRLDVDRLLCASV
CCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCHHHCEEECCCCCCCHHHHHHHHH
ALGGGAVWSMHFIGMVAYQTPTHREFGLFMTLASLVVVMVLAGAGLAIASRPRGSRTDNV
HCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCH
IKGGVLTGLGVVAMHYTGMAAIRSNTRFDWDLAIIGLSVVIAVVVSVVALWLATTVKTRG
HCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQLAAAVVMGVAVCGMHYTGMSAGTMICTSPTYAPSLFAIEGDSIGYAVFGLTLITLLVI
HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
LVVEATRTGAEVVPVARTRDAA
HHHHCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377; 11728710 [H]