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The map label for this gene is yfdE [H]

Identifier: 116695844

GI number: 116695844

Start: 2153994

End: 2155229

Strand: Direct

Name: yfdE [H]

Synonym: H16_B1908

Alternate gene names: 116695844

Gene position: 2153994-2155229 (Clockwise)

Preceding gene: 116695843

Following gene: 116695846

Centisome position: 73.96

GC content: 69.34

Gene sequence:

>1236_bases
ATGTTGCGCGACGCACTGGACGGCCTGACCGTCATCGATTTCACGCAGATCGGCGCCGGGCCGACCTGCACCATGCTGCT
GGCCGACATGGGCGCGAGGGTCATCAAGGTGGAGCCGCCGGGCGGTGAGATGGGCCGCGGGCTGGGGCCCGGCTGGCTCG
GCGACGACAGCGCGCTGTTTCACGGCTTCAACCGCAACAAGCTGGGCGTGGCGCTCGACCTGAAGTCCGCCGACGGCGTG
GCCGTGGCCCGCCGCCTGATCGTGGGTGCCGACATCGTGGTGGAAAGCATGCGGCCCGGCGTGATGGAACGCCTCGGCCT
TGGCCATGCGCAACTGGCGGACGAACACCCCGCGCTGATCTACTGCTCGATCTCCGCCTACGGGCAGGAGGGACCATATG
CGAGCCGCGCCGGCGTCGACGGCATCATGCAGGCGGATTCCGGCCTGATGAGCCTGATCGGCCTGCCCGACGGCGAGCCG
TGCAAGGTGCAGGCGCCGGTCGTCGACGTGATGACCGGCTACGTGGCCTCCGTGGGCGTGTTGGCGAAGCTCGCGCAGCG
GGCCCGCGACGGCCTGGGCGGCCATCTCGACGTCAACCTGCTCAATGCGGCGCTGGCGCTGCAGCAGTCGTCCATCACCA
GCTACTGCGCCGACGGGCAACTGCCGGAACGTGTGGGCAGCGCGGCGCCCTACTCAGCGCCCAACCAGGCCTTCCGCACC
GCCGATGGCTGGGTCATGGTGGCCGCCTATATGCCCGAGCGCTGGCGCCGGTTGTGCGATGTGCTGGGCCGGCCCGAACT
GGCCGGCGATCCGCGCTTTGCGACTTCACCGCTGCGCGTGGTCAATCGCGCGGCAATGGTGGAGGTGCTGACCAGTGCCT
TCGTCACCCGCGCGACCGACACATGGCTGGCGTTGCTCCAGGACGCCGACATTCTGTGCGCCCCCGTGGCGACCTACGAG
GACGTCATGGCGCATCCGCAGGTGGCCGCCAACCGCATGGTGCAGCGCGTCCGGCACGACACGCTGGGCGAGATCCGCAT
GCCGGGATTCCCGATCAACAGCGCTCAGGAGAACGCGTTGCCATCGCGGCCGGCACCAGCTTGCGGACAGCATACGCAGG
CGGTGCTGGGCGAGCTTGGCTACAGCCGCGACGAAATCGCCGCGCTGTCGTCTCGGGGCGCTATCCGCTGCGGCGATATC
GAGGAAAAGCGACACGTGGTCGCGGCGGCATCGTGA

Upstream 100 bases:

>100_bases
CTGTACTTCGCCTCGGCGGAGCTGACCACCGATGCCGGCGTGCTGGTGGCGACCGCGCAAGGCACGTTCAAACGATCCCG
CACCCTACCGGAGGCATGAC

Downstream 100 bases:

>100_bases
GCGCGCTCAACCCTGAGTGTCAAACTGCGCCAGCAGCCATTGCCGGAACACTGCCATGCTCGGGCTCTCCTTGCGATCGG
CAGGCGTCAGCAGGTAGTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MLRDALDGLTVIDFTQIGAGPTCTMLLADMGARVIKVEPPGGEMGRGLGPGWLGDDSALFHGFNRNKLGVALDLKSADGV
AVARRLIVGADIVVESMRPGVMERLGLGHAQLADEHPALIYCSISAYGQEGPYASRAGVDGIMQADSGLMSLIGLPDGEP
CKVQAPVVDVMTGYVASVGVLAKLAQRARDGLGGHLDVNLLNAALALQQSSITSYCADGQLPERVGSAAPYSAPNQAFRT
ADGWVMVAAYMPERWRRLCDVLGRPELAGDPRFATSPLRVVNRAAMVEVLTSAFVTRATDTWLALLQDADILCAPVATYE
DVMAHPQVAANRMVQRVRHDTLGEIRMPGFPINSAQENALPSRPAPACGQHTQAVLGELGYSRDEIAALSSRGAIRCGDI
EEKRHVVAAAS

Sequences:

>Translated_411_residues
MLRDALDGLTVIDFTQIGAGPTCTMLLADMGARVIKVEPPGGEMGRGLGPGWLGDDSALFHGFNRNKLGVALDLKSADGV
AVARRLIVGADIVVESMRPGVMERLGLGHAQLADEHPALIYCSISAYGQEGPYASRAGVDGIMQADSGLMSLIGLPDGEP
CKVQAPVVDVMTGYVASVGVLAKLAQRARDGLGGHLDVNLLNAALALQQSSITSYCADGQLPERVGSAAPYSAPNQAFRT
ADGWVMVAAYMPERWRRLCDVLGRPELAGDPRFATSPLRVVNRAAMVEVLTSAFVTRATDTWLALLQDADILCAPVATYE
DVMAHPQVAANRMVQRVRHDTLGEIRMPGFPINSAQENALPSRPAPACGQHTQAVLGELGYSRDEIAALSSRGAIRCGDI
EEKRHVVAAAS
>Mature_411_residues
MLRDALDGLTVIDFTQIGAGPTCTMLLADMGARVIKVEPPGGEMGRGLGPGWLGDDSALFHGFNRNKLGVALDLKSADGV
AVARRLIVGADIVVESMRPGVMERLGLGHAQLADEHPALIYCSISAYGQEGPYASRAGVDGIMQADSGLMSLIGLPDGEP
CKVQAPVVDVMTGYVASVGVLAKLAQRARDGLGGHLDVNLLNAALALQQSSITSYCADGQLPERVGSAAPYSAPNQAFRT
ADGWVMVAAYMPERWRRLCDVLGRPELAGDPRFATSPLRVVNRAAMVEVLTSAFVTRATDTWLALLQDADILCAPVATYE
DVMAHPQVAANRMVQRVRHDTLGEIRMPGFPINSAQENALPSRPAPACGQHTQAVLGELGYSRDEIAALSSRGAIRCGDI
EEKRHVVAAAS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=392, Percent_Identity=35.4591836734694, Blast_Score=261, Evalue=8e-70,
Organism=Homo sapiens, GI300863124, Length=418, Percent_Identity=33.2535885167464, Blast_Score=247, Evalue=1e-65,
Organism=Homo sapiens, GI300863126, Length=392, Percent_Identity=32.1428571428571, Blast_Score=216, Evalue=3e-56,
Organism=Homo sapiens, GI13376042, Length=418, Percent_Identity=30.8612440191388, Blast_Score=210, Evalue=2e-54,
Organism=Homo sapiens, GI42794625, Length=410, Percent_Identity=30.7317073170732, Blast_Score=148, Evalue=1e-35,
Organism=Homo sapiens, GI266456254, Length=404, Percent_Identity=31.1881188118812, Blast_Score=147, Evalue=3e-35,
Organism=Homo sapiens, GI266458393, Length=267, Percent_Identity=34.4569288389513, Blast_Score=116, Evalue=5e-26,
Organism=Homo sapiens, GI266458397, Length=262, Percent_Identity=34.3511450381679, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI42822893, Length=191, Percent_Identity=34.0314136125654, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI266458395, Length=191, Percent_Identity=34.0314136125654, Blast_Score=97, Evalue=4e-20,
Organism=Escherichia coli, GI87082093, Length=379, Percent_Identity=34.3007915567282, Blast_Score=219, Evalue=2e-58,
Organism=Escherichia coli, GI1788717, Length=417, Percent_Identity=30.2158273381295, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1786222, Length=411, Percent_Identity=24.5742092457421, Blast_Score=87, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=328, Percent_Identity=25.609756097561, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI115535051, Length=329, Percent_Identity=24.6200607902736, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24648431, Length=398, Percent_Identity=36.4321608040201, Blast_Score=239, Evalue=3e-63,
Organism=Drosophila melanogaster, GI24585488, Length=331, Percent_Identity=27.7945619335347, Blast_Score=107, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43458; Mature: 43458

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRDALDGLTVIDFTQIGAGPTCTMLLADMGARVIKVEPPGGEMGRGLGPGWLGDDSALF
CCCHHHCCCEEEEEHHCCCCCHHHHHHHHCCCEEEEECCCCCHHCCCCCCCCCCCCHHHH
HGFNRNKLGVALDLKSADGVAVARRLIVGADIVVESMRPGVMERLGLGHAQLADEHPALI
CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHCCCCCEEE
YCSISAYGQEGPYASRAGVDGIMQADSGLMSLIGLPDGEPCKVQAPVVDVMTGYVASVGV
EEEEECCCCCCCCCHHCCCCHHHHHCCCHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHH
LAKLAQRARDGLGGHLDVNLLNAALALQQSSITSYCADGQLPERVGSAAPYSAPNQAFRT
HHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHHCC
ADGWVMVAAYMPERWRRLCDVLGRPELAGDPRFATSPLRVVNRAAMVEVLTSAFVTRATD
CCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
TWLALLQDADILCAPVATYEDVMAHPQVAANRMVQRVRHDTLGEIRMPGFPINSAQENAL
HHHHHHHCCCEEEECHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHCCC
PSRPAPACGQHTQAVLGELGYSRDEIAALSSRGAIRCGDIEEKRHVVAAAS
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCEEECCCCCCCCEEEECC
>Mature Secondary Structure
MLRDALDGLTVIDFTQIGAGPTCTMLLADMGARVIKVEPPGGEMGRGLGPGWLGDDSALF
CCCHHHCCCEEEEEHHCCCCCHHHHHHHHCCCEEEEECCCCCHHCCCCCCCCCCCCHHHH
HGFNRNKLGVALDLKSADGVAVARRLIVGADIVVESMRPGVMERLGLGHAQLADEHPALI
CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHCCCCCEEE
YCSISAYGQEGPYASRAGVDGIMQADSGLMSLIGLPDGEPCKVQAPVVDVMTGYVASVGV
EEEEECCCCCCCCCHHCCCCHHHHHCCCHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHH
LAKLAQRARDGLGGHLDVNLLNAALALQQSSITSYCADGQLPERVGSAAPYSAPNQAFRT
HHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHHCC
ADGWVMVAAYMPERWRRLCDVLGRPELAGDPRFATSPLRVVNRAAMVEVLTSAFVTRATD
CCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
TWLALLQDADILCAPVATYEDVMAHPQVAANRMVQRVRHDTLGEIRMPGFPINSAQENAL
HHHHHHHCCCEEEECHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHCCC
PSRPAPACGQHTQAVLGELGYSRDEIAALSSRGAIRCGDIEEKRHVVAAAS
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCEEECCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]