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The map label for this gene is yckA [H]

Identifier: 116695745

GI number: 116695745

Start: 2046333

End: 2046983

Strand: Direct

Name: yckA [H]

Synonym: H16_B1809

Alternate gene names: 116695745

Gene position: 2046333-2046983 (Clockwise)

Preceding gene: 116695744

Following gene: 116695746

Centisome position: 70.26

GC content: 64.36

Gene sequence:

>651_bases
ATGATCACCGAGTTCTCCTGGAATCATCTTGAAATCCTGCTGCTGGCAGCGCGCTGGACGCTGTGGGTGACCTTGCTCGC
CTTCGTCGGCGGCACGCTGGCCGGCTTCCTGGTGGCGCTGGCACGTACCTCCAGAAGCCCGATGCTGCGCCTCGCCAGCA
CGGCCTATATCCAGGTCGTGCAAGGCACGCCGGTGCTGATCGTGCTGTTCCTGAGCTACTACGGACTCTCCGTGCTCGGG
CTCAAGCTGTCGCCGATGGTCGCGGCCATGCTGGCGATGTCGATCTACGCCAGCGCCTACCTTGGCGAGATCTGGCGCGG
CTGCATCGAGGCCGTGCCGCAAGGACAGTGGGAAGCCAGTGAAGCGCTCGCCCTCACCCGCTGGCAGCAGCTGCGCTATG
TGGTGCTGCCGCAGGCCGTGCGGCTGGCCTTGCCGCCCACGGTGGGATTCTCGGTCCAGCTGGTCAAGAACACCTCGATC
ACTTCCATCATCGGCGTCATCGAACTGACCCGCGCCGGCCAGTTGATCAACAACGCGACCTTCCAGCCCTTCGCGGTCTT
CGTCGTCGTCGCACTTATCTACTTCGCGCTCTGCTTCCCGCTGTCGGCGGCGGCGCGGCGCATGGAAAGGAGGCTCCATG
TCAATCGTTGA

Upstream 100 bases:

>100_bases
GGCGCCGCGTGGTGGCGCGCGCACGAAAGCTGGCCCGCACAGCCCGCATCGCGCCAATGGCGCAGGCGGAACTGACGGCA
GCGGCTGCAGGGAGCGCGCA

Downstream 100 bases:

>100_bases
AGCACAAGGCGTGCACAAGTCATATGGCGCTGTCGAAGTCCTGAAGGGCGTTTCGTTTGCGATCGAGCCGGGCCAGGTGG
TCGCCATCATCGGCCGCAGC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MITEFSWNHLEILLLAARWTLWVTLLAFVGGTLAGFLVALARTSRSPMLRLASTAYIQVVQGTPVLIVLFLSYYGLSVLG
LKLSPMVAAMLAMSIYASAYLGEIWRGCIEAVPQGQWEASEALALTRWQQLRYVVLPQAVRLALPPTVGFSVQLVKNTSI
TSIIGVIELTRAGQLINNATFQPFAVFVVVALIYFALCFPLSAAARRMERRLHVNR

Sequences:

>Translated_216_residues
MITEFSWNHLEILLLAARWTLWVTLLAFVGGTLAGFLVALARTSRSPMLRLASTAYIQVVQGTPVLIVLFLSYYGLSVLG
LKLSPMVAAMLAMSIYASAYLGEIWRGCIEAVPQGQWEASEALALTRWQQLRYVVLPQAVRLALPPTVGFSVQLVKNTSI
TSIIGVIELTRAGQLINNATFQPFAVFVVVALIYFALCFPLSAAARRMERRLHVNR
>Mature_216_residues
MITEFSWNHLEILLLAARWTLWVTLLAFVGGTLAGFLVALARTSRSPMLRLASTAYIQVVQGTPVLIVLFLSYYGLSVLG
LKLSPMVAAMLAMSIYASAYLGEIWRGCIEAVPQGQWEASEALALTRWQQLRYVVLPQAVRLALPPTVGFSVQLVKNTSI
TSIIGVIELTRAGQLINNATFQPFAVFVVVALIYFALCFPLSAAARRMERRLHVNR

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=206, Percent_Identity=37.378640776699, Blast_Score=141, Evalue=3e-35,
Organism=Escherichia coli, GI1787030, Length=210, Percent_Identity=35.2380952380952, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI87082239, Length=206, Percent_Identity=33.495145631068, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1788645, Length=203, Percent_Identity=31.0344827586207, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1788646, Length=216, Percent_Identity=28.7037037037037, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786873, Length=222, Percent_Identity=28.8288288288288, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787087, Length=191, Percent_Identity=29.3193717277487, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI48994930, Length=138, Percent_Identity=34.7826086956522, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787086, Length=179, Percent_Identity=29.0502793296089, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786874, Length=168, Percent_Identity=31.547619047619, Blast_Score=74, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23856; Mature: 23856

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITEFSWNHLEILLLAARWTLWVTLLAFVGGTLAGFLVALARTSRSPMLRLASTAYIQVV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEE
QGTPVLIVLFLSYYGLSVLGLKLSPMVAAMLAMSIYASAYLGEIWRGCIEAVPQGQWEAS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
EALALTRWQQLRYVVLPQAVRLALPPTVGFSVQLVKNTSITSIIGVIELTRAGQLINNAT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCC
FQPFAVFVVVALIYFALCFPLSAAARRMERRLHVNR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MITEFSWNHLEILLLAARWTLWVTLLAFVGGTLAGFLVALARTSRSPMLRLASTAYIQVV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEE
QGTPVLIVLFLSYYGLSVLGLKLSPMVAAMLAMSIYASAYLGEIWRGCIEAVPQGQWEAS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
EALALTRWQQLRYVVLPQAVRLALPPTVGFSVQLVKNTSITSIIGVIELTRAGQLINNAT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCC
FQPFAVFVVVALIYFALCFPLSAAARRMERRLHVNR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]