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The map label for this gene is sdsB [H]

Identifier: 116695691

GI number: 116695691

Start: 1994107

End: 1994976

Strand: Direct

Name: sdsB [H]

Synonym: H16_B1755

Alternate gene names: 116695691

Gene position: 1994107-1994976 (Clockwise)

Preceding gene: 116695688

Following gene: 116695692

Centisome position: 68.47

GC content: 63.79

Gene sequence:

>870_bases
ATGGCGTCCTTCAGCCAGGCGGCACAACGCCTGCACCTGACCCAGTCCGCGCTGAGCCGGAGCATCCAGACGTTGGAGGA
CGAACTGGGAGGCCGCCTGATCGACCGGCACGGCAAGCGCAATGTGCTGACCCCATTGGGGGAGCTGACTGCAAACCGGG
CCCGGCGCATCGTGTTCGAGGAAGCGGAACTGCACCGCAGCGTCGAACTGTTCCACCACCACCACCTGGGTGCCATCCGC
GTCGGGCTGGGCGCGGGGCCGGGCGCAGTGCTGGCGACGCCGTTTCTCCGATACATGGCCAGGCACCATCCCGGCATACA
GGTCAGCGTGTCGCTTGGTACTTCCGATGCGCTGATGATCCAGCTGCGTCAGCGATCGCTTGATGCAGTCATCGTGGAGG
TGAGCAGCGTGGCGCCAGCAACGGACCTTCGCCACGAACTGCTGAACGCGTTGCAGGGCCGCTTTATCTGCCGCACAGGA
CATCCGCTTGTGCAACAGGCTGCCGGCGGAGACGCCGTATCGTTTGACGATGTCATGCGTTATCCGCTGGCTTCCGCCCC
GCTCAGCACGGAAGTCGCGCGCAACCTGGTGAAGCGCTTCGGTCCACGCGCGGATCCGGAGCATTGCCTTAGCCTCAGGT
GCGAGAATGTCCGGAGCCTGGTCGAAGCTGTGCTGGATTCCGACGCGATACTGTTCAGCATCGTCGCCGCAGTGCGTGCG
GAGATTGCCGCAGGAAAACTATGCGAACTGGTCACGACCCCAGCGGTCGATGATGGCCCCCGCTATGCCTCTTTCACCCT
GGCGGGGCGGACCGAGGCGCCCAGCATGGAAATATTCCGGAAATTCACGGACGAGCATTTGCGTGACTAG

Upstream 100 bases:

>100_bases
TGCGTCCAATGCATTATCGGTCTAAAATTTATTCAAAAATCTCATCTATAAGTGCGCAATGCATCTCAAACATCTCAAGC
ATCTGCTGATGGTGGCGGAT

Downstream 100 bases:

>100_bases
CCGCCAGGCGAGCTGTTCCCGATCGGCAGCGTTATGCTTGAATCCATTCAGGGCAATGATGTGCCTTGTCGATGCACAAT
AAGAGTTCCTTGGATCACCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MASFSQAAQRLHLTQSALSRSIQTLEDELGGRLIDRHGKRNVLTPLGELTANRARRIVFEEAELHRSVELFHHHHLGAIR
VGLGAGPGAVLATPFLRYMARHHPGIQVSVSLGTSDALMIQLRQRSLDAVIVEVSSVAPATDLRHELLNALQGRFICRTG
HPLVQQAAGGDAVSFDDVMRYPLASAPLSTEVARNLVKRFGPRADPEHCLSLRCENVRSLVEAVLDSDAILFSIVAAVRA
EIAAGKLCELVTTPAVDDGPRYASFTLAGRTEAPSMEIFRKFTDEHLRD

Sequences:

>Translated_289_residues
MASFSQAAQRLHLTQSALSRSIQTLEDELGGRLIDRHGKRNVLTPLGELTANRARRIVFEEAELHRSVELFHHHHLGAIR
VGLGAGPGAVLATPFLRYMARHHPGIQVSVSLGTSDALMIQLRQRSLDAVIVEVSSVAPATDLRHELLNALQGRFICRTG
HPLVQQAAGGDAVSFDDVMRYPLASAPLSTEVARNLVKRFGPRADPEHCLSLRCENVRSLVEAVLDSDAILFSIVAAVRA
EIAAGKLCELVTTPAVDDGPRYASFTLAGRTEAPSMEIFRKFTDEHLRD
>Mature_288_residues
ASFSQAAQRLHLTQSALSRSIQTLEDELGGRLIDRHGKRNVLTPLGELTANRARRIVFEEAELHRSVELFHHHHLGAIRV
GLGAGPGAVLATPFLRYMARHHPGIQVSVSLGTSDALMIQLRQRSLDAVIVEVSSVAPATDLRHELLNALQGRFICRTGH
PLVQQAAGGDAVSFDDVMRYPLASAPLSTEVARNLVKRFGPRADPEHCLSLRCENVRSLVEAVLDSDAILFSIVAAVRAE
IAAGKLCELVTTPAVDDGPRYASFTLAGRTEAPSMEIFRKFTDEHLRD

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=158, Percent_Identity=29.1139240506329, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31557; Mature: 31425

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASFSQAAQRLHLTQSALSRSIQTLEDELGGRLIDRHGKRNVLTPLGELTANRARRIVFE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
EAELHRSVELFHHHHLGAIRVGLGAGPGAVLATPFLRYMARHHPGIQVSVSLGTSDALMI
HHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHH
QLRQRSLDAVIVEVSSVAPATDLRHELLNALQGRFICRTGHPLVQQAAGGDAVSFDDVMR
HHHHHHHHHHEEEHHHCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCCCCHHHHHH
YPLASAPLSTEVARNLVKRFGPRADPEHCLSLRCENVRSLVEAVLDSDAILFSIVAAVRA
CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
EIAAGKLCELVTTPAVDDGPRYASFTLAGRTEAPSMEIFRKFTDEHLRD
HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ASFSQAAQRLHLTQSALSRSIQTLEDELGGRLIDRHGKRNVLTPLGELTANRARRIVFE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
EAELHRSVELFHHHHLGAIRVGLGAGPGAVLATPFLRYMARHHPGIQVSVSLGTSDALMI
HHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHH
QLRQRSLDAVIVEVSSVAPATDLRHELLNALQGRFICRTGHPLVQQAAGGDAVSFDDVMR
HHHHHHHHHHEEEHHHCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCCCCHHHHHH
YPLASAPLSTEVARNLVKRFGPRADPEHCLSLRCENVRSLVEAVLDSDAILFSIVAAVRA
CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
EIAAGKLCELVTTPAVDDGPRYASFTLAGRTEAPSMEIFRKFTDEHLRD
HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]