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The map label for this gene is prtI [H]

Identifier: 116695664

GI number: 116695664

Start: 1963319

End: 1963837

Strand: Direct

Name: prtI [H]

Synonym: H16_B1727

Alternate gene names: 116695664

Gene position: 1963319-1963837 (Clockwise)

Preceding gene: 116695661

Following gene: 116695665

Centisome position: 67.41

GC content: 59.92

Gene sequence:

>519_bases
ATGGACAAAGACTTTACAGATGATGCGCTGCGCGAAATGATCCCGAGAATGCGCCGCTTTGCGATATCGCTAACGCGCAA
CGACGCCACTGCCGACGATCTGGTTCAGGCGTGCTTGGAGCGCGCGCTGGTGCGTCGGACTTCTCGACAGGATGCCGGCG
ACTTACGCGCCTGGCTGTTTTCAATCCTCTACCGTCTCTTTCTTGACGGCCAGCGTCGCGCCAAGCGGTATGCACTGGTG
TTGTCGCTGTTTGGCGTTGGCAGTGACGAAGACAGCGCACCATCGGCCGAAGACATGGTTGTGGCAAGATCGGCCCTCGA
GAGTTTCAACAAATTGTCTGCCGAGCAACGCGCGCTGTTGATCCTGGTGACGGTGGAAGGCCTGAGTTACCGGGAGGCCG
CCGATGCGCTGGACGTGCCGATCGGCACCATCATGTCGCGCATATCGCGGGCCCGGAAGACGCTGCGCGAATTTTCCGAA
GGCAGGGTCGTCCCTCCCTCCATGCAGGTCCTCAAATGA

Upstream 100 bases:

>100_bases
GTCGCATCTACTGGAACCGCAGTTTTGCAATCTTGGGAATAAGCCGCGTCGCCGTTCGTTTACCTTGTAACCGTGAACCC
TGCCTTGGCTGTTCCGCCCC

Downstream 100 bases:

>100_bases
AGATGCTCATTCCCACCGAACCCGAACTCCATGCCTATGTCGATGGCGAGCTGGATGAAACGCGGAGACGGCAGATCGAG
AGCCTGATAGCCAGCCAGCC

Product: DNA-directed RNA polymerase sigma subunit PrtI (ECF sigma factor)

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MDKDFTDDALREMIPRMRRFAISLTRNDATADDLVQACLERALVRRTSRQDAGDLRAWLFSILYRLFLDGQRRAKRYALV
LSLFGVGSDEDSAPSAEDMVVARSALESFNKLSAEQRALLILVTVEGLSYREAADALDVPIGTIMSRISRARKTLREFSE
GRVVPPSMQVLK

Sequences:

>Translated_172_residues
MDKDFTDDALREMIPRMRRFAISLTRNDATADDLVQACLERALVRRTSRQDAGDLRAWLFSILYRLFLDGQRRAKRYALV
LSLFGVGSDEDSAPSAEDMVVARSALESFNKLSAEQRALLILVTVEGLSYREAADALDVPIGTIMSRISRARKTLREFSE
GRVVPPSMQVLK
>Mature_172_residues
MDKDFTDDALREMIPRMRRFAISLTRNDATADDLVQACLERALVRRTSRQDAGDLRAWLFSILYRLFLDGQRRAKRYALV
LSLFGVGSDEDSAPSAEDMVVARSALESFNKLSAEQRALLILVTVEGLSYREAADALDVPIGTIMSRISRARKTLREFSE
GRVVPPSMQVLK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19370; Mature: 19370

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKDFTDDALREMIPRMRRFAISLTRNDATADDLVQACLERALVRRTSRQDAGDLRAWLF
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
SILYRLFLDGQRRAKRYALVLSLFGVGSDEDSAPSAEDMVVARSALESFNKLSAEQRALL
HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEE
ILVTVEGLSYREAADALDVPIGTIMSRISRARKTLREFSEGRVVPPSMQVLK
EEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCC
>Mature Secondary Structure
MDKDFTDDALREMIPRMRRFAISLTRNDATADDLVQACLERALVRRTSRQDAGDLRAWLF
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
SILYRLFLDGQRRAKRYALVLSLFGVGSDEDSAPSAEDMVVARSALESFNKLSAEQRALL
HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEE
ILVTVEGLSYREAADALDVPIGTIMSRISRARKTLREFSEGRVVPPSMQVLK
EEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]