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The map label for this gene is nodB [H]

Identifier: 116695605

GI number: 116695605

Start: 1877410

End: 1878141

Strand: Direct

Name: nodB [H]

Synonym: H16_B1666

Alternate gene names: 116695605

Gene position: 1877410-1878141 (Clockwise)

Preceding gene: 116695604

Following gene: 116695606

Centisome position: 64.46

GC content: 72.95

Gene sequence:

>732_bases
ATGCTGGCGCACCCTGAGGCCATGGGCATGGCGCTGGCCGGCGTTGGTGCCGCCCATGCGGCAATGTGCGCCGCCGGCCT
GTGGCCGCGCAGCCACTGGCTTGGCCCCAATGTGCTGCGCCTGCCGCCCTCTGCCGATGATTGCGTGGCACTGACATTCG
ACGACGGCCCCAACCCGGCGTTGACGCCGCGCGTGCTCGACATGCTGGACCAGCACGGCGCGCGCGCGACCTTCTTCTGC
GTCGGCGCGCGCGCCGCGGCGCATCCGGAACTGGTGCGCGAGATCGTCGGCCGCGGCCACGCCGTGGAGAACCACAGCAT
GTACCACCGGCTGCACTTCTCGGTGTTCGGTCCCGGGCGCATGCTGCGCGACATCGGTGCCGCGCAGCAGGTGCTGACCG
ACCTCACCGGCCAGGCGCCGCGCTTCTTCCGCGCGCCCGCGGGGCTGCGCAATCCCTTCCTTGAGCCGGTGCTGTGCCGG
CTCGGGCTTCAGCTTGCGGCCTGGACCCGGCGCGGCTTCGATACCCGCTGCGGCGACCACGCGGGGCGCGTGGCGCAGCG
CCTCACCGGCAAGCTCGCCGGGCGCGACATCCTGCTGCTGCACGACGGCAATCCCGGCACCGATGCCGCCGGCAATGCAC
ATTGCACCACCGTGCTGCCGGGCCTGCTCGCTGCCATCGAACGCGCCGGCCTGCGCTGCGTCACGCTGCGCGCGGCCGTG
CCGACAGCCTGA

Upstream 100 bases:

>100_bases
ACCGCGCGTAGCCTTGCGCGGCACCTCTTACAGCCGCCCCTGGCGCCCCACCCCGCTGCTTTACGGCGCCGCCGCCGTGC
ACCTGGGTGCCTCCGGCGCA

Downstream 100 bases:

>100_bases
GTGAGCGGCGGCTTGTTACAATTGGCACAGCCTTCCGAGATTCCTTCCATTCGTTCCCCCTAAGCCGTGTCCCCGCTCCT
GTTCTCGCATTTCACGGCCA

Product: chitooligosaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MLAHPEAMGMALAGVGAAHAAMCAAGLWPRSHWLGPNVLRLPPSADDCVALTFDDGPNPALTPRVLDMLDQHGARATFFC
VGARAAAHPELVREIVGRGHAVENHSMYHRLHFSVFGPGRMLRDIGAAQQVLTDLTGQAPRFFRAPAGLRNPFLEPVLCR
LGLQLAAWTRRGFDTRCGDHAGRVAQRLTGKLAGRDILLLHDGNPGTDAAGNAHCTTVLPGLLAAIERAGLRCVTLRAAV
PTA

Sequences:

>Translated_243_residues
MLAHPEAMGMALAGVGAAHAAMCAAGLWPRSHWLGPNVLRLPPSADDCVALTFDDGPNPALTPRVLDMLDQHGARATFFC
VGARAAAHPELVREIVGRGHAVENHSMYHRLHFSVFGPGRMLRDIGAAQQVLTDLTGQAPRFFRAPAGLRNPFLEPVLCR
LGLQLAAWTRRGFDTRCGDHAGRVAQRLTGKLAGRDILLLHDGNPGTDAAGNAHCTTVLPGLLAAIERAGLRCVTLRAAV
PTA
>Mature_243_residues
MLAHPEAMGMALAGVGAAHAAMCAAGLWPRSHWLGPNVLRLPPSADDCVALTFDDGPNPALTPRVLDMLDQHGARATFFC
VGARAAAHPELVREIVGRGHAVENHSMYHRLHFSVFGPGRMLRDIGAAQQVLTDLTGQAPRFFRAPAGLRNPFLEPVLCR
LGLQLAAWTRRGFDTRCGDHAGRVAQRLTGKLAGRDILLLHDGNPGTDAAGNAHCTTVLPGLLAAIERAGLRCVTLRAAV
PTA

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 25812; Mature: 25812

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAHPEAMGMALAGVGAAHAAMCAAGLWPRSHWLGPNVLRLPPSADDCVALTFDDGPNPA
CCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHCCCCCEEECCCCCCCEEEEEECCCCCCC
LTPRVLDMLDQHGARATFFCVGARAAAHPELVREIVGRGHAVENHSMYHRLHFSVFGPGR
CCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEECCHH
MLRDIGAAQQVLTDLTGQAPRFFRAPAGLRNPFLEPVLCRLGLQLAAWTRRGFDTRCGDH
HHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCHH
AGRVAQRLTGKLAGRDILLLHDGNPGTDAAGNAHCTTVLPGLLAAIERAGLRCVTLRAAV
HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
PTA
CCC
>Mature Secondary Structure
MLAHPEAMGMALAGVGAAHAAMCAAGLWPRSHWLGPNVLRLPPSADDCVALTFDDGPNPA
CCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHCCCCCEEECCCCCCCEEEEEECCCCCCC
LTPRVLDMLDQHGARATFFCVGARAAAHPELVREIVGRGHAVENHSMYHRLHFSVFGPGR
CCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEECCHH
MLRDIGAAQQVLTDLTGQAPRFFRAPAGLRNPFLEPVLCRLGLQLAAWTRRGFDTRCGDH
HHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCHH
AGRVAQRLTGKLAGRDILLLHDGNPGTDAAGNAHCTTVLPGLLAAIERAGLRCVTLRAAV
HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
PTA
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10474187 [H]