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The map label for this gene is arnD [H]

Identifier: 116695582

GI number: 116695582

Start: 1855072

End: 1855968

Strand: Direct

Name: arnD [H]

Synonym: H16_B1643

Alternate gene names: 116695582

Gene position: 1855072-1855968 (Clockwise)

Preceding gene: 116695581

Following gene: 116695587

Centisome position: 63.69

GC content: 68.45

Gene sequence:

>897_bases
ATGGCACGCATTGCCCTGAAGGTCGACGTCGACACGCTGCGCGGCACGCGCGAAGGCGTGCCGAAGCTGCTGTCGATGCT
GGCGGCTGCGCAAGCGCAGGCAACCTTCCTGTTCAGCCTCGGCCCCGACCATACCGGCTGGGCGCTGCGGCGCGTATTCC
GGCCCGGCTTCCTGAAGAAGGTGTCGCGCACCTCGGTGGTGTCCAACTATGGCCTGCGCACGCTGATGTATGGCGTGCTG
CTGCCGGGGCCGGACATCGGCCGCAAGGGCGCCGCCGAGATGCGCGCGGCGCGCGCTGCCGGCCATGAGTGTGGCATCCA
CACCTGGGACCACGTCTACTGGCAGGACAACGTGCGCGAGCGCGATGCTGCCTGGACGCGCCGGCAGATGCAGCAGGCGT
TCGCGCGCTACACCGAGATCTTCGGCGAAGCGCCGGCCACGCACGGCGCAGCCGGCTGGCAGATGAACGAGGATGCGTTC
CGCCAGATCGATGACTGGGGCATGGCGTACGCGTCGGATGGACGCGGCACCGCGCCTTATGTTCCGACGATCGACGGCGT
GCCCTGCCGGCACGTGCAGATGCCGACCACGCTGCCCACGCTGGATGAACTGATCGGCACCGACGACCTGACCGAAGACA
ACGTCCACACCGCGCTGCTGAAGCTGACCGAAGGCACGCGCGACCATGTCTTCACGCTGCATACCGAGCTGGAAGGCGGC
AAGCTGGCGCCGGTGTTCGAGCGGCTGCTGGCCGGATGGCGTGCGCAGGGGCACGAGCTGGTGTCGATGGCGACGTGGTA
TCGCGGGCTGAATCGGCAGGGATTGCCGGAGTTGCCGGTAACGTGGGGGGAGATCCCGGGGCGCAGCGGGGAGTTGATCG
TGCAGCCGCAGGGCTGA

Upstream 100 bases:

>100_bases
AGCATGGAAGCGGCGCTGCGCCGCATCTTCGAGGCGTACCGCGGCAAGGTGGTCGAGGCCCGCACGCTGGTCGATTCGGC
CAACTGAGCGCGCAACGCAA

Downstream 100 bases:

>100_bases
CCGCGTGACTTCTCGTTTGCCGGCAAGCGCTAGCCGCGCCGCTCCGCCCCCACGCGCAGCCCGTTGAACACCACCAGCAG
GCTCGCGCCCATATCGGCGA

Product: xylanase/chitin deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MARIALKVDVDTLRGTREGVPKLLSMLAAAQAQATFLFSLGPDHTGWALRRVFRPGFLKKVSRTSVVSNYGLRTLMYGVL
LPGPDIGRKGAAEMRAARAAGHECGIHTWDHVYWQDNVRERDAAWTRRQMQQAFARYTEIFGEAPATHGAAGWQMNEDAF
RQIDDWGMAYASDGRGTAPYVPTIDGVPCRHVQMPTTLPTLDELIGTDDLTEDNVHTALLKLTEGTRDHVFTLHTELEGG
KLAPVFERLLAGWRAQGHELVSMATWYRGLNRQGLPELPVTWGEIPGRSGELIVQPQG

Sequences:

>Translated_298_residues
MARIALKVDVDTLRGTREGVPKLLSMLAAAQAQATFLFSLGPDHTGWALRRVFRPGFLKKVSRTSVVSNYGLRTLMYGVL
LPGPDIGRKGAAEMRAARAAGHECGIHTWDHVYWQDNVRERDAAWTRRQMQQAFARYTEIFGEAPATHGAAGWQMNEDAF
RQIDDWGMAYASDGRGTAPYVPTIDGVPCRHVQMPTTLPTLDELIGTDDLTEDNVHTALLKLTEGTRDHVFTLHTELEGG
KLAPVFERLLAGWRAQGHELVSMATWYRGLNRQGLPELPVTWGEIPGRSGELIVQPQG
>Mature_297_residues
ARIALKVDVDTLRGTREGVPKLLSMLAAAQAQATFLFSLGPDHTGWALRRVFRPGFLKKVSRTSVVSNYGLRTLMYGVLL
PGPDIGRKGAAEMRAARAAGHECGIHTWDHVYWQDNVRERDAAWTRRQMQQAFARYTEIFGEAPATHGAAGWQMNEDAFR
QIDDWGMAYASDGRGTAPYVPTIDGVPCRHVQMPTTLPTLDELIGTDDLTEDNVHTALLKLTEGTRDHVFTLHTELEGGK
LAPVFERLLAGWRAQGHELVSMATWYRGLNRQGLPELPVTWGEIPGRSGELIVQPQG

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788590, Length=299, Percent_Identity=36.4548494983278, Blast_Score=171, Evalue=5e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 33055; Mature: 32924

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARIALKVDVDTLRGTREGVPKLLSMLAAAQAQATFLFSLGPDHTGWALRRVFRPGFLKK
CCEEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHCCHHHHH
VSRTSVVSNYGLRTLMYGVLLPGPDIGRKGAAEMRAARAAGHECGIHTWDHVYWQDNVRE
HHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHEEECCCCHH
RDAAWTRRQMQQAFARYTEIFGEAPATHGAAGWQMNEDAFRQIDDWGMAYASDGRGTAPY
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCEEECCCCCCCCC
VPTIDGVPCRHVQMPTTLPTLDELIGTDDLTEDNVHTALLKLTEGTRDHVFTLHTELEGG
CCCCCCCCCCCEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCC
KLAPVFERLLAGWRAQGHELVSMATWYRGLNRQGLPELPVTWGEIPGRSGELIVQPQG
CCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
>Mature Secondary Structure 
ARIALKVDVDTLRGTREGVPKLLSMLAAAQAQATFLFSLGPDHTGWALRRVFRPGFLKK
CEEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHCCHHHHH
VSRTSVVSNYGLRTLMYGVLLPGPDIGRKGAAEMRAARAAGHECGIHTWDHVYWQDNVRE
HHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHEEECCCCHH
RDAAWTRRQMQQAFARYTEIFGEAPATHGAAGWQMNEDAFRQIDDWGMAYASDGRGTAPY
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCEEECCCCCCCCC
VPTIDGVPCRHVQMPTTLPTLDELIGTDDLTEDNVHTALLKLTEGTRDHVFTLHTELEGG
CCCCCCCCCCCEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCC
KLAPVFERLLAGWRAQGHELVSMATWYRGLNRQGLPELPVTWGEIPGRSGELIVQPQG
CCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA