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The map label for this gene is yfdZ [H]

Identifier: 116695131

GI number: 116695131

Start: 1340185

End: 1341411

Strand: Direct

Name: yfdZ [H]

Synonym: H16_B1186

Alternate gene names: 116695131

Gene position: 1340185-1341411 (Clockwise)

Preceding gene: 116695130

Following gene: 116695138

Centisome position: 46.02

GC content: 65.44

Gene sequence:

>1227_bases
ATGACTGCCGCTTCTGGCAAGCGCCGCTTTGCGCGCATCGATCGCCTTCCCCCGTACGTTTTCAATATCACCGCCGAGCT
GAAGATGGCCGCCCGCCGCCGTGGCGAGGACATCATCGACATGAGCATGGGCAACCCCGATGGCGCCACGCCGGCGCATA
TCGTGGCCAAGCTCACGGAAGCGGCGCAACGGCCCGATACGCACGGCTATTCGGCCTCCAAGGGCATCCCGCGGCTGCGC
CGCGCGATCGCGCACTGGTACCGCGAACGCTATGACGTGGAGATTGACCCGGATACCGAGGCCATCGTCACCATCGGGTC
CAAGGAAGGCCTGGCGCACTTGATGCTGGCCACGCTGGACCGCGGCGACACGGTGCTGGTGCCCGATCCCAGCTACCCCA
TCCATATCTACGGCGCGGTCATTGCCGGCGCGGATATCCGCTCGGTGCCGCTGGTGCCGGGCATCGATTTCTTTGCCGAG
CTGGAGCGCGCCATCCGCGGCAGCTATCCCAAGCCGAAGATGATCGTGCTGGGCTTTCCGTCCAACCCCACCGCGCAATG
CGTGGAGCTGGACTTCTTCGAGCGCGTGATTGCGCTGGCACGCAAGCACGACATCTTCGTGGTGCACGACCTGGCCTATG
CCGACATCGTGTTCGATGGCTGGAAGGCGCCGTCGATCATGCAGGTGCCGGGCGCCAAGGACATCGCGGTGGAGTTCTTC
ACGCTGTCCAAGAGCTACAACATGGCGGGCTGGCGCGTGGGCTTCATGGTGGGCAACCCGGACCTGGTGGCGGCGCTGAC
GCGCATCAAGAGCTATCACGACTACGGCACCTTCACGCCGCTGCAGATCGCGGCCATTGCCGCGCTGGAGGGCGACCAGC
AATGCGTCAGCGAGATCGCCGCGCAGTACCAGTCGCGCCGTGACGTGCTGGCGCGCGGGCTGATCGAAGCAGGCTGGCCG
GTGGAGATCCCGAAGGCGTCGATGTATATCTGGGCGCGGATTCCCGAGCCGTACCGCGCGCTGGGCTCGCTGGAATTCTC
CAAGCAGCTGCTGGCCAAGGCCAAGGTATCGGTCTCGCCGGGCATCGGCTTTGGCGACTATGGCGACGAGTATGTGCGCT
TTGCCCTGATCGAGAACGAATCGCGCATCCGGCAGGCGGTGCGGGGCATCAAGGCGATGTTCCGGGCCGACGGGCTGGTC
AAGCCGGCATCAACCGCGCAGGCATGA

Upstream 100 bases:

>100_bases
CATTCGCCGCATCCCCGCTAACATGAGTCTCCGGCAGCCGAGACAACGGCTGCCGACGTCGCTCGGACGGTTCCGGGCGC
TTACGTAAAGGACTTCCTCC

Downstream 100 bases:

>100_bases
ACCAGCGCTGCGCTCAGTAGCGGCGCAGCGCCTCCAGGTCAAGCACATGCACCACGCTGTGCTTGACCGCCAGCAAGCCT
TCATCCTCCAGCACCTTGAG

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MTAASGKRRFARIDRLPPYVFNITAELKMAARRRGEDIIDMSMGNPDGATPAHIVAKLTEAAQRPDTHGYSASKGIPRLR
RAIAHWYRERYDVEIDPDTEAIVTIGSKEGLAHLMLATLDRGDTVLVPDPSYPIHIYGAVIAGADIRSVPLVPGIDFFAE
LERAIRGSYPKPKMIVLGFPSNPTAQCVELDFFERVIALARKHDIFVVHDLAYADIVFDGWKAPSIMQVPGAKDIAVEFF
TLSKSYNMAGWRVGFMVGNPDLVAALTRIKSYHDYGTFTPLQIAAIAALEGDQQCVSEIAAQYQSRRDVLARGLIEAGWP
VEIPKASMYIWARIPEPYRALGSLEFSKQLLAKAKVSVSPGIGFGDYGDEYVRFALIENESRIRQAVRGIKAMFRADGLV
KPASTAQA

Sequences:

>Translated_408_residues
MTAASGKRRFARIDRLPPYVFNITAELKMAARRRGEDIIDMSMGNPDGATPAHIVAKLTEAAQRPDTHGYSASKGIPRLR
RAIAHWYRERYDVEIDPDTEAIVTIGSKEGLAHLMLATLDRGDTVLVPDPSYPIHIYGAVIAGADIRSVPLVPGIDFFAE
LERAIRGSYPKPKMIVLGFPSNPTAQCVELDFFERVIALARKHDIFVVHDLAYADIVFDGWKAPSIMQVPGAKDIAVEFF
TLSKSYNMAGWRVGFMVGNPDLVAALTRIKSYHDYGTFTPLQIAAIAALEGDQQCVSEIAAQYQSRRDVLARGLIEAGWP
VEIPKASMYIWARIPEPYRALGSLEFSKQLLAKAKVSVSPGIGFGDYGDEYVRFALIENESRIRQAVRGIKAMFRADGLV
KPASTAQA
>Mature_407_residues
TAASGKRRFARIDRLPPYVFNITAELKMAARRRGEDIIDMSMGNPDGATPAHIVAKLTEAAQRPDTHGYSASKGIPRLRR
AIAHWYRERYDVEIDPDTEAIVTIGSKEGLAHLMLATLDRGDTVLVPDPSYPIHIYGAVIAGADIRSVPLVPGIDFFAEL
ERAIRGSYPKPKMIVLGFPSNPTAQCVELDFFERVIALARKHDIFVVHDLAYADIVFDGWKAPSIMQVPGAKDIAVEFFT
LSKSYNMAGWRVGFMVGNPDLVAALTRIKSYHDYGTFTPLQIAAIAALEGDQQCVSEIAAQYQSRRDVLARGLIEAGWPV
EIPKASMYIWARIPEPYRALGSLEFSKQLLAKAKVSVSPGIGFGDYGDEYVRFALIENESRIRQAVRGIKAMFRADGLVK
PASTAQA

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI56713254, Length=428, Percent_Identity=24.7663551401869, Blast_Score=119, Evalue=7e-27,
Organism=Homo sapiens, GI56713256, Length=418, Percent_Identity=24.1626794258373, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI95147551, Length=413, Percent_Identity=24.455205811138, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI169881279, Length=413, Percent_Identity=24.455205811138, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI169881281, Length=239, Percent_Identity=23.8493723849372, Blast_Score=76, Evalue=6e-14,
Organism=Escherichia coli, GI1788722, Length=407, Percent_Identity=81.0810810810811, Blast_Score=698, Evalue=0.0,
Organism=Escherichia coli, GI1786816, Length=368, Percent_Identity=23.9130434782609, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788627, Length=241, Percent_Identity=29.045643153527, Blast_Score=92, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI71994476, Length=359, Percent_Identity=25.3481894150418, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71994472, Length=368, Percent_Identity=25, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17567369, Length=398, Percent_Identity=23.3668341708543, Blast_Score=113, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6322401, Length=393, Percent_Identity=19.5928753180662, Blast_Score=90, Evalue=5e-19,
Organism=Saccharomyces cerevisiae, GI6320317, Length=349, Percent_Identity=22.9226361031519, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28573069, Length=412, Percent_Identity=24.5145631067961, Blast_Score=124, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24646114, Length=412, Percent_Identity=24.5145631067961, Blast_Score=124, Evalue=2e-28,
Organism=Drosophila melanogaster, GI28573067, Length=412, Percent_Identity=24.5145631067961, Blast_Score=124, Evalue=2e-28,
Organism=Drosophila melanogaster, GI28573065, Length=412, Percent_Identity=24.5145631067961, Blast_Score=124, Evalue=2e-28,
Organism=Drosophila melanogaster, GI18859735, Length=251, Percent_Identity=25.0996015936255, Blast_Score=76, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: 2.6.1.- [C]

Molecular weight: Translated: 44983; Mature: 44852

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAASGKRRFARIDRLPPYVFNITAELKMAARRRGEDIIDMSMGNPDGATPAHIVAKLTE
CCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
AAQRPDTHGYSASKGIPRLRRAIAHWYRERYDVEIDPDTEAIVTIGSKEGLAHLMLATLD
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEECCCCCEEEEECCCCCHHHHHHHHCC
RGDTVLVPDPSYPIHIYGAVIAGADIRSVPLVPGIDFFAELERAIRGSYPKPKMIVLGFP
CCCEEEECCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECC
SNPTAQCVELDFFERVIALARKHDIFVVHDLAYADIVFDGWKAPSIMQVPGAKDIAVEFF
CCCCCHHEEHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCEEECCCCCCEEEEEE
TLSKSYNMAGWRVGFMVGNPDLVAALTRIKSYHDYGTFTPLQIAAIAALEGDQQCVSEIA
EECCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHH
AQYQSRRDVLARGLIEAGWPVEIPKASMYIWARIPEPYRALGSLEFSKQLLAKAKVSVSP
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHCCHHHHHHHHHHHHEEECC
GIGFGDYGDEYVRFALIENESRIRQAVRGIKAMFRADGLVKPASTAQA
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TAASGKRRFARIDRLPPYVFNITAELKMAARRRGEDIIDMSMGNPDGATPAHIVAKLTE
CCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
AAQRPDTHGYSASKGIPRLRRAIAHWYRERYDVEIDPDTEAIVTIGSKEGLAHLMLATLD
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEECCCCCEEEEECCCCCHHHHHHHHCC
RGDTVLVPDPSYPIHIYGAVIAGADIRSVPLVPGIDFFAELERAIRGSYPKPKMIVLGFP
CCCEEEECCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECC
SNPTAQCVELDFFERVIALARKHDIFVVHDLAYADIVFDGWKAPSIMQVPGAKDIAVEFF
CCCCCHHEEHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCEEECCCCCCEEEEEE
TLSKSYNMAGWRVGFMVGNPDLVAALTRIKSYHDYGTFTPLQIAAIAALEGDQQCVSEIA
EECCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHH
AQYQSRRDVLARGLIEAGWPVEIPKASMYIWARIPEPYRALGSLEFSKQLLAKAKVSVSP
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHCCHHHHHHHHHHHHEEECC
GIGFGDYGDEYVRFALIENESRIRQAVRGIKAMFRADGLVKPASTAQA
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]