Click here to switch to the map view.

The map label for this gene is ycdC [C]

Identifier: 116695106

GI number: 116695106

Start: 1312561

End: 1313148

Strand: Direct

Name: ycdC [C]

Synonym: H16_B1161

Alternate gene names: 116695106

Gene position: 1312561-1313148 (Clockwise)

Preceding gene: 116695105

Following gene: 116695115

Centisome position: 45.07

GC content: 68.37

Gene sequence:

>588_bases
ATGAACACCCGATCCGTACGCGAGCAACTGGTCGAACATGCGCTGGTGCTGATCCGCCGCAGGGGGTTCAATGGCTTCAG
CTACCGCGACCTGGCCGACCTGGTCGGGGTCAAGACCTCGAGCATCCACTATTACTTCCCGTCCAAGGACGACCTGGTGC
TGGCAGCGGTGCGCGAATACGGCACCCGCAGGCGGGCGCGCCTGGATGCGATCGACGCCAGCCTGCCGCCCGCGGAGCAG
GCGCGGCAATACCTTGCGCCTTTGCGCGCGGGTGCCGGCACCGACCAGGCTTGCCTGGTGGGCATGCTGTCGGCCGACGT
GCTGATGCTGCCGGACGCGGTGCGCGCCGCGATGCAGGACTTTATCCGGCTCAATGAGCAATGGCTGGCCAGCTTGTTCG
AGCGCGCCGCGGCGCAGCGCAAGTCGCCCTATCCGATTCCGCCGCAGCAGCTGGCGCAGGTGGTGTTCGGGGCGTTGCAG
AACGGCTTGATCAGTGCGCGGCTGTTTGGCACGCCGGACCGGCTCGATGCCGCGGCGGCGCTGCTGACCAGCGCCATGCC
GGCGGAGCAGGCCTTAGCCGCCGCTTAG

Upstream 100 bases:

>100_bases
ATGGGTAGGGCTTTGCTTCGCAAGCGGGTCCCTCATCACGCTGATCGCACAAACGCTGCCGGCCTGAACGGCGCGGCAGC
AAGACGATGGAGTTGATGCC

Downstream 100 bases:

>100_bases
TGTCAGTATCACCGAGCCGGCGACGGCATTGCACAGCCACTGCGGGTCATCGTGGGGCAGGTCATGCCCGGCCCAGTGGT
GCGTCAGCAACTGCGCGTCC

Product: TetR/AcrR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Transcriptional Regulatory Protein; Transcriptional Regulator Protein; Regulatory Protein TetR; TetR Family Regulatory Protein; TetR/AcrR Family Transcriptional Regulator; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Regulatory Protein Tetr; Transcriptional Regulator Of TetR Family Protein; TetR-Family Transcriptional Regulator; Transcriptional Regulator Protein Tetr Family

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MNTRSVREQLVEHALVLIRRRGFNGFSYRDLADLVGVKTSSIHYYFPSKDDLVLAAVREYGTRRRARLDAIDASLPPAEQ
ARQYLAPLRAGAGTDQACLVGMLSADVLMLPDAVRAAMQDFIRLNEQWLASLFERAAAQRKSPYPIPPQQLAQVVFGALQ
NGLISARLFGTPDRLDAAAALLTSAMPAEQALAAA

Sequences:

>Translated_195_residues
MNTRSVREQLVEHALVLIRRRGFNGFSYRDLADLVGVKTSSIHYYFPSKDDLVLAAVREYGTRRRARLDAIDASLPPAEQ
ARQYLAPLRAGAGTDQACLVGMLSADVLMLPDAVRAAMQDFIRLNEQWLASLFERAAAQRKSPYPIPPQQLAQVVFGALQ
NGLISARLFGTPDRLDAAAALLTSAMPAEQALAAA
>Mature_195_residues
MNTRSVREQLVEHALVLIRRRGFNGFSYRDLADLVGVKTSSIHYYFPSKDDLVLAAVREYGTRRRARLDAIDASLPPAEQ
ARQYLAPLRAGAGTDQACLVGMLSADVLMLPDAVRAAMQDFIRLNEQWLASLFERAAAQRKSPYPIPPQQLAQVVFGALQ
NGLISARLFGTPDRLDAAAALLTSAMPAEQALAAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21309; Mature: 21309

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTRSVREQLVEHALVLIRRRGFNGFSYRDLADLVGVKTSSIHYYFPSKDDLVLAAVREY
CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH
GTRRRARLDAIDASLPPAEQARQYLAPLRAGAGTDQACLVGMLSADVLMLPDAVRAAMQD
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCHHHHHHHHH
FIRLNEQWLASLFERAAAQRKSPYPIPPQQLAQVVFGALQNGLISARLFGTPDRLDAAAA
HHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHH
LLTSAMPAEQALAAA
HHHHHCCHHHHHHCC
>Mature Secondary Structure
MNTRSVREQLVEHALVLIRRRGFNGFSYRDLADLVGVKTSSIHYYFPSKDDLVLAAVREY
CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH
GTRRRARLDAIDASLPPAEQARQYLAPLRAGAGTDQACLVGMLSADVLMLPDAVRAAMQD
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCHHHHHHHHH
FIRLNEQWLASLFERAAAQRKSPYPIPPQQLAQVVFGALQNGLISARLFGTPDRLDAAAA
HHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHH
LLTSAMPAEQALAAA
HHHHHCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA