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The map label for this gene is ycjC [C]

Identifier: 116695076

GI number: 116695076

Start: 1282012

End: 1282749

Strand: Direct

Name: ycjC [C]

Synonym: H16_B1131

Alternate gene names: 116695076

Gene position: 1282012-1282749 (Clockwise)

Preceding gene: 116695067

Following gene: 116695077

Centisome position: 44.02

GC content: 67.34

Gene sequence:

>738_bases
TTGAAACCACACACCGCCCAGGGGCGCGGCAGCGGCATCGGGACCGATGACGGCGAGTCGCGCACGCTCGACCGTGAAAC
CTTTGGCAAGCGCCTGCGCGCGGCGCGCAAGGCCTTTGGCTGGACGCTGGCGCACCTCGCCGAACTGTCGGGAGTCTCGA
TCACCACCATCTCGCGTGCGGAGCGCGGGCAACTGGCGCTGGGCTACGAGAATTTTGCCGCGCTGGGCCAGGCGCTGCAG
ATGGACATGGGCTCGATGTTCGCGGGTGCCGGCACGAAGACGTCACCGTTCCAGGGGCCGGTCGTGACCCGGGCCGGCGC
GGGCGTGACCTACCGGGGATCGTCGCTGACCTATGAGTTTCTTGGCACAGAGGCCGTCGGCAAGCAGATGAGCCCGGTGG
TCGGCACCGTGCATGCGCGCCGCATCGAGGGCCCCGGTGACTTCTCGCGCCATCCCGGCGAGGAGTTTGTCTATGTGCTC
AGCGGCGAGATCGAAATCCATTTCGACAACGGCGAGAAGCTGCACCTGGCGCGGGGCGATGCGTTGTATTTCGATGCCCG
CATGGGCCACGCCTACATCAGCGTAAGCCGGCAGCTCGCCCGGATCGTGGGTGTGACCACCAGCGAAAGCAACTTGATGA
AGTCGGCCCAGGCGGCGAAGCCGGAGGCCGTGCCAAAACGGGCCGTCGGGCGCACGCAGGGGAAAGCCGCCGCGACCAGG
GGCAAGGGCAAAGGCTGA

Upstream 100 bases:

>100_bases
GCGGATACGCAAATCTTGCGCTAAGGTGGGCGGCAAGGGGATAAGCCTTGGCGCGGTCTGCTCTGTTAGCATTCCGTCCA
ACGGAAAAAAGGACGCAGGC

Downstream 100 bases:

>100_bases
AGGGGGCGGAACCCGCGCTTTCAGGTTCCGAGGTGAAACATTGCTTGCGGAGCCCCGTGTGGCCGTGGATACGGCATGGG
GTCGGTGTTCTTCGCCATAT

Product: transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Cupin 2 Domain-Containing Protein; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator HTH_3 Family; MerR Family Transcriptional Regulator; Helix-Turn-Helix Family; Transcriptional Regulator Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Transcriptional Regulator MerR Family; Transcriptional Regulator-Like Protein; Cupin 2 Barrel Domain-Containing Protein; Transcriptional Regulator Xre Family; XRE Family-Like Protein; HTH_3family Transcriptional Regulator; Phosphotransbutyrylase

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MKPHTAQGRGSGIGTDDGESRTLDRETFGKRLRAARKAFGWTLAHLAELSGVSITTISRAERGQLALGYENFAALGQALQ
MDMGSMFAGAGTKTSPFQGPVVTRAGAGVTYRGSSLTYEFLGTEAVGKQMSPVVGTVHARRIEGPGDFSRHPGEEFVYVL
SGEIEIHFDNGEKLHLARGDALYFDARMGHAYISVSRQLARIVGVTTSESNLMKSAQAAKPEAVPKRAVGRTQGKAAATR
GKGKG

Sequences:

>Translated_245_residues
MKPHTAQGRGSGIGTDDGESRTLDRETFGKRLRAARKAFGWTLAHLAELSGVSITTISRAERGQLALGYENFAALGQALQ
MDMGSMFAGAGTKTSPFQGPVVTRAGAGVTYRGSSLTYEFLGTEAVGKQMSPVVGTVHARRIEGPGDFSRHPGEEFVYVL
SGEIEIHFDNGEKLHLARGDALYFDARMGHAYISVSRQLARIVGVTTSESNLMKSAQAAKPEAVPKRAVGRTQGKAAATR
GKGKG
>Mature_245_residues
MKPHTAQGRGSGIGTDDGESRTLDRETFGKRLRAARKAFGWTLAHLAELSGVSITTISRAERGQLALGYENFAALGQALQ
MDMGSMFAGAGTKTSPFQGPVVTRAGAGVTYRGSSLTYEFLGTEAVGKQMSPVVGTVHARRIEGPGDFSRHPGEEFVYVL
SGEIEIHFDNGEKLHLARGDALYFDARMGHAYISVSRQLARIVGVTTSESNLMKSAQAAKPEAVPKRAVGRTQGKAAATR
GKGKG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26014; Mature: 26014

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPHTAQGRGSGIGTDDGESRTLDRETFGKRLRAARKAFGWTLAHLAELSGVSITTISRA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
ERGQLALGYENFAALGQALQMDMGSMFAGAGTKTSPFQGPVVTRAGAGVTYRGSSLTYEF
CCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEECCCEEEEE
LGTEAVGKQMSPVVGTVHARRIEGPGDFSRHPGEEFVYVLSGEIEIHFDNGEKLHLARGD
CCCHHHHHHCCHHHHHHHHEEECCCCCCCCCCCCEEEEEEECEEEEEECCCCEEEEECCC
ALYFDARMGHAYISVSRQLARIVGVTTSESNLMKSAQAAKPEAVPKRAVGRTQGKAAATR
EEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHCC
GKGKG
CCCCC
>Mature Secondary Structure
MKPHTAQGRGSGIGTDDGESRTLDRETFGKRLRAARKAFGWTLAHLAELSGVSITTISRA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
ERGQLALGYENFAALGQALQMDMGSMFAGAGTKTSPFQGPVVTRAGAGVTYRGSSLTYEF
CCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEECCCEEEEE
LGTEAVGKQMSPVVGTVHARRIEGPGDFSRHPGEEFVYVLSGEIEIHFDNGEKLHLARGD
CCCHHHHHHCCHHHHHHHHEEECCCCCCCCCCCCEEEEEEECEEEEEECCCCEEEEECCC
ALYFDARMGHAYISVSRQLARIVGVTTSESNLMKSAQAAKPEAVPKRAVGRTQGKAAATR
EEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHCC
GKGKG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA