Click here to switch to the map view.

The map label for this gene is caiA [C]

Identifier: 116694883

GI number: 116694883

Start: 1058518

End: 1059696

Strand: Direct

Name: caiA [C]

Synonym: H16_B0938

Alternate gene names: 116694883

Gene position: 1058518-1059696 (Clockwise)

Preceding gene: 116694881

Following gene: 116694884

Centisome position: 36.34

GC content: 71.84

Gene sequence:

>1179_bases
ATGGAAACCCTTTCCGCAGCGGATGCCAGCGCAGGCGCACAGGCCGACTGGCTCGGCCTGGCCGCGACCCTGGGCCGCAC
CTTCGACGCACGCGCGCCAGAGATCGATGCCAGCGGGCAGTTCGTCAGCGCCAACTACGACGACCTGCGCGCGCACCGCT
TCTTTGCCGCGGCCGTGCCGCGGGAACTTGGCGGCGCCGGGCTGTCGCACCAGGAGCTGGGCGCGGTGCTGCGCGAGCTG
GGCAAGTACTGCGGATCGACCGCGCTGGCCTTTGCCATGCACACCCACCCGGTGGCCACGGCCGCGTGGCGCTGGCGCAA
TCAGCAAGCGTCGGTGGAGGGGCTGCTCAAGCGCGTGGCGGGCGAGCAGATGGTGCTGCTGGGCAGCGGCGGTTCGGACT
GGCTGCAGGGCAGCGGCAAGGCTACGCGCGTGGATGGCGGCTTTCGCGTGGATGCGCGCAAGATCTTCGCCAGCGGCGCG
CCGGCGGCGGACCTGTTCATGACCTGCGCCGTCCATGACGATCCGGAGACCGGGCCCACGGTGCTGCATTTCGCGCTGCC
GATGAAGTCGCCGGGCGTACGCGTGCTGTCGAACTGGCACACGCTGGGCATGCGCGGCACCGGCTCGCATGATGTGCTGC
TTGAAGGCGTGCTGGTTCCGGATACCGCCATTGCCGCCCGCCGCCCGCAAGGCGTGTGGCATCCGATGATGCATACGGTG
GCGATGATCGCGCTGCCGCTGATCTATGCGGTCTACGTCGGCGTGGCCGAGGCCGCGCGCGATATCGCGCTGCAGCTGGC
GCGCCAGCGGCGCCTGAGCGCACATGCGGTGGAAGCCGCCGGGCGCCTGTGCAACGAGGCCGATGCCGCGCAGCTGGCGC
TGGATGCGATGTTCGCGGCGGCATCGGGGCAGGCGCCGGGCGCGGTCACCACCAACCGCATCATGTGCGCCCGCACGCTG
GCCGCGCGCGCGGTGCTGGCGACGGTCGAGGCGGCGATGGACCTGGCCGGCGGCGCGGGCTTCTATCGCGATGCCGGGCT
GGAGCGGCGCTTTCGCGATGCGCAGGGCGCGCGCTTCCATCCGCTGCAGGCCGGTGCCCAGCAGGAGTACGCAGGGCGCA
TGGCACTGGGGCTGGATCTCGATGCGCCGCCCGGCGAGGTGCGGCCTGCCGCGCAATGA

Upstream 100 bases:

>100_bases
CCCGATCATACGGGCAAGGGGACCGGGCTCCGATACTAGCACCGTGCCTGGCGCCATACAACGCCGCAGCGCACGTATCA
GACTAGCCGGAGACAACACC

Downstream 100 bases:

>100_bases
TCCCCGCCCTGGCGCCGCTGCCGTATGACACGCAAGCCTGCAACGACAGCGGCCAGGACGACCCGGCCCGCGCCATCAGC
CACGATGGCGCGGCGCGGCG

Product: Acyl-CoA dehydrogenase

Products: gamma-butyrobetaine; Acceptor; gamma-butyrobetainyl-CoA [C]

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
METLSAADASAGAQADWLGLAATLGRTFDARAPEIDASGQFVSANYDDLRAHRFFAAAVPRELGGAGLSHQELGAVLREL
GKYCGSTALAFAMHTHPVATAAWRWRNQQASVEGLLKRVAGEQMVLLGSGGSDWLQGSGKATRVDGGFRVDARKIFASGA
PAADLFMTCAVHDDPETGPTVLHFALPMKSPGVRVLSNWHTLGMRGTGSHDVLLEGVLVPDTAIAARRPQGVWHPMMHTV
AMIALPLIYAVYVGVAEAARDIALQLARQRRLSAHAVEAAGRLCNEADAAQLALDAMFAAASGQAPGAVTTNRIMCARTL
AARAVLATVEAAMDLAGGAGFYRDAGLERRFRDAQGARFHPLQAGAQQEYAGRMALGLDLDAPPGEVRPAAQ

Sequences:

>Translated_392_residues
METLSAADASAGAQADWLGLAATLGRTFDARAPEIDASGQFVSANYDDLRAHRFFAAAVPRELGGAGLSHQELGAVLREL
GKYCGSTALAFAMHTHPVATAAWRWRNQQASVEGLLKRVAGEQMVLLGSGGSDWLQGSGKATRVDGGFRVDARKIFASGA
PAADLFMTCAVHDDPETGPTVLHFALPMKSPGVRVLSNWHTLGMRGTGSHDVLLEGVLVPDTAIAARRPQGVWHPMMHTV
AMIALPLIYAVYVGVAEAARDIALQLARQRRLSAHAVEAAGRLCNEADAAQLALDAMFAAASGQAPGAVTTNRIMCARTL
AARAVLATVEAAMDLAGGAGFYRDAGLERRFRDAQGARFHPLQAGAQQEYAGRMALGLDLDAPPGEVRPAAQ
>Mature_392_residues
METLSAADASAGAQADWLGLAATLGRTFDARAPEIDASGQFVSANYDDLRAHRFFAAAVPRELGGAGLSHQELGAVLREL
GKYCGSTALAFAMHTHPVATAAWRWRNQQASVEGLLKRVAGEQMVLLGSGGSDWLQGSGKATRVDGGFRVDARKIFASGA
PAADLFMTCAVHDDPETGPTVLHFALPMKSPGVRVLSNWHTLGMRGTGSHDVLLEGVLVPDTAIAARRPQGVWHPMMHTV
AMIALPLIYAVYVGVAEAARDIALQLARQRRLSAHAVEAAGRLCNEADAAQLALDAMFAAASGQAPGAVTTNRIMCARTL
AARAVLATVEAAMDLAGGAGFYRDAGLERRFRDAQGARFHPLQAGAQQEYAGRMALGLDLDAPPGEVRPAAQ

Specific function: Gives rise to a blue or pink color to bacterial colonies. May have an hydroxylase activity, resulting in the observed pigment production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI17538396, Length=308, Percent_Identity=21.7532467532468, Blast_Score=73, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.- [C]

Molecular weight: Translated: 41207; Mature: 41207

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METLSAADASAGAQADWLGLAATLGRTFDARAPEIDASGQFVSANYDDLRAHRFFAAAVP
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCC
RELGGAGLSHQELGAVLRELGKYCGSTALAFAMHTHPVATAAWRWRNQQASVEGLLKRVA
HHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHC
GEQMVLLGSGGSDWLQGSGKATRVDGGFRVDARKIFASGAPAADLFMTCAVHDDPETGPT
CCEEEEEECCCCHHHCCCCCEEEECCCEEEHHHHHHHCCCCHHHHEEEEEECCCCCCCCE
VLHFALPMKSPGVRVLSNWHTLGMRGTGSHDVLLEGVLVPDTAIAARRPQGVWHPMMHTV
EEEEEECCCCCCHHEEECCEEECCCCCCCCCEEEEEEECCCHHHHCCCCCCCHHHHHHHH
AMIALPLIYAVYVGVAEAARDIALQLARQRRLSAHAVEAAGRLCNEADAAQLALDAMFAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
ASGQAPGAVTTNRIMCARTLAARAVLATVEAAMDLAGGAGFYRDAGLERRFRDAQGARFH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHCCCCEEC
PLQAGAQQEYAGRMALGLDLDAPPGEVRPAAQ
CCCCCCHHHHCCCEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
METLSAADASAGAQADWLGLAATLGRTFDARAPEIDASGQFVSANYDDLRAHRFFAAAVP
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCC
RELGGAGLSHQELGAVLRELGKYCGSTALAFAMHTHPVATAAWRWRNQQASVEGLLKRVA
HHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHC
GEQMVLLGSGGSDWLQGSGKATRVDGGFRVDARKIFASGAPAADLFMTCAVHDDPETGPT
CCEEEEEECCCCHHHCCCCCEEEECCCEEEHHHHHHHCCCCHHHHEEEEEECCCCCCCCE
VLHFALPMKSPGVRVLSNWHTLGMRGTGSHDVLLEGVLVPDTAIAARRPQGVWHPMMHTV
EEEEEECCCCCCHHEEECCEEECCCCCCCCCEEEEEEECCCHHHHCCCCCCCHHHHHHHH
AMIALPLIYAVYVGVAEAARDIALQLARQRRLSAHAVEAAGRLCNEADAAQLALDAMFAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
ASGQAPGAVTTNRIMCARTLAARAVLATVEAAMDLAGGAGFYRDAGLERRFRDAQGARFH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHCCCCEEC
PLQAGAQQEYAGRMALGLDLDAPPGEVRPAAQ
CCCCCCHHHHCCCEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: crotono-betaine; reduced acceptor; crotonobetainyl-CoA [C]

Specific reaction: reduced acceptor + crotono-betaine = Acceptor + gamma-butyrobetaine reduced acceptor + crotonobetainyl-CoA = Acceptor + gamma-butyrobetainyl-CoA [C]

General reaction: Oxidoreductases; Acting on the CH-CH group of donors; With other acceptors [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2230720 [H]