Click here to switch to the map view.

The map label for this gene is 116694798

Identifier: 116694798

GI number: 116694798

Start: 966189

End: 967214

Strand: Direct

Name: 116694798

Synonym: H16_B0852

Alternate gene names: NA

Gene position: 966189-967214 (Clockwise)

Preceding gene: 116694797

Following gene: 116694799

Centisome position: 33.17

GC content: 66.96

Gene sequence:

>1026_bases
ATGGTGATGGGTGCGGCGCTGGCCGCGGGCAATGCCGTGGCGGGCACGATGCAGTTGTTCGGGGTGGTCGATGCATCGAT
CGAATACGCCAGGGGCTCGGAAAGCGTGGTGCGCATGCGCGAAGGCCAGCAGGCCGCGTCGCGCTGGGGCATCCGCGGCA
TCGAGGACCTGGGCGGCGGGCTCAAGGCCAACTTCCTGGTCGAGTCGGGCTTCAATATCGACAACGGCACCGAGTTCTTC
GGCAACAACCGGCTGTTCGGGCGGCAGGCCTATCTGGGCCTGTCGGGCAACTGGGGCGAGTTCCGGCTGGGGCGGCAGTA
CACGCCGTCGTTCTATGCGCTGCTGCGGCTGGATCCGTTCCTGCTCAATGGCGCGGTGTCGCCGTTCAACCTGCTGAGCG
CGACCGCATCACAGGGCACCGGGCACGTGGCCTACGGCGCCCGCTTCGACAACGCGGTGCAGTATTTCTCGCCCAAGTGG
GGCGGCTTTTCCTTCGGCGCAGCGGTGGCGCCGGGCGAGGTGCCGGGGTCGGCGCGCTCAGGGCTGAACTTCGGCATGAA
TGCGACCTACGAGGCCGGCAACGTCTACGCGTTCTACTCCTACCAGGGGATGTATTCGGGCGCCAACGTGCCGGTGGAAC
CGACGCTGACTTCCAACCATTTCGTCGGCGGCTCCTATCGCTTCAAGCCGGTGGAAATCGGCCTGCTGTACAGCGCCGCC
AGCAGCGACCGGCCCGAGACCCGCTCGGCACGCCACTACGGCGTGACCTTCAGCTGGAACGTGACGCAGCGCGACACCTT
CAAGGCCGCCGCACTCAAGCGCCAGATCCTGGGCGGCGGCCAGCGGCCGCTGGCGGTGACGCTGGGGTGGGACCATGACC
TGAGCAAGCGCACCACCGCCTATGTGCGGGCGGTGCTGGTGCATAACAGCCCTGGCGGCAGCGTGAGCAACAACAGCATC
GTGATCGATCCGGGTAGCGGGGATGATGCGAAGTCGGTGAGCGTGGGGTTGCGGCATCGGTTCTGA

Upstream 100 bases:

>100_bases
GCCGCGTGGGGCGAGGTGGTGAAGGTGGCGGGGCTGCAGGCGAAGTAAGGCTGGACCACAACAACAACGGGAGACAGGCA
GCGTGAAGGTAAGACAGTGG

Downstream 100 bases:

>100_bases
AACGGACTGCTGCCCGTTCATGCGGCGCTGAGGCCAAGCGGCTGAGGCTACGGAGACCCGGGGCGGGCTGCCACCTGTCC
CGTGGCGCTCCCCGCAAACT

Product: outer membrane protein (porin)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MVMGAALAAGNAVAGTMQLFGVVDASIEYARGSESVVRMREGQQAASRWGIRGIEDLGGGLKANFLVESGFNIDNGTEFF
GNNRLFGRQAYLGLSGNWGEFRLGRQYTPSFYALLRLDPFLLNGAVSPFNLLSATASQGTGHVAYGARFDNAVQYFSPKW
GGFSFGAAVAPGEVPGSARSGLNFGMNATYEAGNVYAFYSYQGMYSGANVPVEPTLTSNHFVGGSYRFKPVEIGLLYSAA
SSDRPETRSARHYGVTFSWNVTQRDTFKAAALKRQILGGGQRPLAVTLGWDHDLSKRTTAYVRAVLVHNSPGGSVSNNSI
VIDPGSGDDAKSVSVGLRHRF

Sequences:

>Translated_341_residues
MVMGAALAAGNAVAGTMQLFGVVDASIEYARGSESVVRMREGQQAASRWGIRGIEDLGGGLKANFLVESGFNIDNGTEFF
GNNRLFGRQAYLGLSGNWGEFRLGRQYTPSFYALLRLDPFLLNGAVSPFNLLSATASQGTGHVAYGARFDNAVQYFSPKW
GGFSFGAAVAPGEVPGSARSGLNFGMNATYEAGNVYAFYSYQGMYSGANVPVEPTLTSNHFVGGSYRFKPVEIGLLYSAA
SSDRPETRSARHYGVTFSWNVTQRDTFKAAALKRQILGGGQRPLAVTLGWDHDLSKRTTAYVRAVLVHNSPGGSVSNNSI
VIDPGSGDDAKSVSVGLRHRF
>Mature_341_residues
MVMGAALAAGNAVAGTMQLFGVVDASIEYARGSESVVRMREGQQAASRWGIRGIEDLGGGLKANFLVESGFNIDNGTEFF
GNNRLFGRQAYLGLSGNWGEFRLGRQYTPSFYALLRLDPFLLNGAVSPFNLLSATASQGTGHVAYGARFDNAVQYFSPKW
GGFSFGAAVAPGEVPGSARSGLNFGMNATYEAGNVYAFYSYQGMYSGANVPVEPTLTSNHFVGGSYRFKPVEIGLLYSAA
SSDRPETRSARHYGVTFSWNVTQRDTFKAAALKRQILGGGQRPLAVTLGWDHDLSKRTTAYVRAVLVHNSPGGSVSNNSI
VIDPGSGDDAKSVSVGLRHRF

Specific function: Forms anion selective channels [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 36465; Mature: 36465

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMGAALAAGNAVAGTMQLFGVVDASIEYARGSESVVRMREGQQAASRWGIRGIEDLGGG
CEECCEEECCCCHHHHHHEEEEHCCCEEECCCCHHHHHHHCCHHHHHHCCCCCHHHHCCC
LKANFLVESGFNIDNGTEFFGNNRLFGRQAYLGLSGNWGEFRLGRQYTPSFYALLRLDPF
EEEEEEEECCCCCCCCCEECCCCEEECEEEEEECCCCCCCEECCCCCCCCEEEEEECCHH
LLNGAVSPFNLLSATASQGTGHVAYGARFDNAVQYFSPKWGGFSFGAAVAPGEVPGSARS
HCCCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHCCCCCCCEECCCCCCCCCCCCCCCC
GLNFGMNATYEAGNVYAFYSYQGMYSGANVPVEPTLTSNHFVGGSYRFKPVEIGLLYSAA
CCCCCCCCEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEECCCEEEEEEEEEEEEECC
SSDRPETRSARHYGVTFSWNVTQRDTFKAAALKRQILGGGQRPLAVTLGWDHDLSKRTTA
CCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHEE
YVRAVLVHNSPGGSVSNNSIVIDPGSGDDAKSVSVGLRHRF
EEEEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MVMGAALAAGNAVAGTMQLFGVVDASIEYARGSESVVRMREGQQAASRWGIRGIEDLGGG
CEECCEEECCCCHHHHHHEEEEHCCCEEECCCCHHHHHHHCCHHHHHHCCCCCHHHHCCC
LKANFLVESGFNIDNGTEFFGNNRLFGRQAYLGLSGNWGEFRLGRQYTPSFYALLRLDPF
EEEEEEEECCCCCCCCCEECCCCEEECEEEEEECCCCCCCEECCCCCCCCEEEEEECCHH
LLNGAVSPFNLLSATASQGTGHVAYGARFDNAVQYFSPKWGGFSFGAAVAPGEVPGSARS
HCCCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHCCCCCCCEECCCCCCCCCCCCCCCC
GLNFGMNATYEAGNVYAFYSYQGMYSGANVPVEPTLTSNHFVGGSYRFKPVEIGLLYSAA
CCCCCCCCEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEECCCEEEEEEEEEEEEECC
SSDRPETRSARHYGVTFSWNVTQRDTFKAAALKRQILGGGQRPLAVTLGWDHDLSKRTTA
CCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHEE
YVRAVLVHNSPGGSVSNNSIVIDPGSGDDAKSVSVGLRHRF
EEEEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]