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The map label for this gene is ycdC [C]

Identifier: 116694666

GI number: 116694666

Start: 805628

End: 806866

Strand: Direct

Name: ycdC [C]

Synonym: H16_B0715

Alternate gene names: 116694666

Gene position: 805628-806866 (Clockwise)

Preceding gene: 116694665

Following gene: 116694674

Centisome position: 27.66

GC content: 67.8

Gene sequence:

>1239_bases
ATGTCCAAGGACCCCGCGCAAGCCCGCCTGACCCGCCGCTATGTCGAAAAGCGCGAGGCCATCCTGGACGCCGCCGCGCG
GCGCTTCAACCACCAGGGCGTACGGGGCACCACCTTGTCGGATGTGGCGGAGGACGTGGGCCTGAGCACCAACAGCATCA
CGTACTACTACCGCAAGAAGGAAGACCTGGTGGTGGCGTGCCTGCTGCGCGCCATCGGCGAGATGGTGGACATCGCTAGT
GCGGCCCAGCAGCAGCCGGCGCCGCGCGAACGGGTAAAGGCCTTCATCGCGCTGTTCTTCGAGCGCCTGGCGCGCACCGC
CACCGGCGAGCGGCCTGAACTGATGAGTTTTCGCGAGATCCGGGCGCTGCCGGACAGCCATGCCGATATCGCATTCGACG
CCTACACCGACATGTTCCGCCGCATCCGCCAGCTGCTGCGCGAGCGCCCGCCGGCCGATCCGGCGCAGCGCAGTGCGCTG
AGCGCGCGCGCTCACCTGCTGCTGTCGCTGGCGACCGGCGCGATGTCGTGGGTGGAGCGCTATGAGCCCGAGGACTATCC
GAAGGTGGCGCAGACCGTGGTCGACGTGCTGCTGCACGGCATTGCCGCGCCGTCGGCCCGCTGGCATGCGCAGATGGACG
TATCCGCGCTGCTGCCTGCGCCGGACAGGCCCGAGACCACGCAGGAGGCGTTCCTGCGCGCCGCGACCGAGCTGCTCAAC
GAGCAGGGCTATCGCGGCGCGTCGGCCGACCGCATCTCGGCGCGGCTGAACCTGACCAAGGGCGCGTTCTATCACCACAA
CGAGAACAAGGACGACCTGATCTCGGCCTGCGTCGACCGCATGTTTGCAGTGATCCGCAATACCCAGACGCTGGTGGAGA
ACGGCCCGGGCACTGGCTGGGACAAGCTGTGCGCGGTGTCGCGGGCGCTGGTGCAATACCAGTTCTCCAGCCAGGGGCCG
CTGCTGCGCCTGACCATCTATGGCGCGCTGCCCGAGGACATGCGCAAGGAGAAGATGCTGACCATGAGCCGGCTGTCGGC
GCGGATCGTGCGCTTCCTGGTGCTGGGCATGCAGGATGGCTCGATCCGGGCACTGGACCAGTCCATTGCCGCGCTGCAGG
TCAACGGCATGATCAATGCCGCGGTGGAGTTGTCCCGCTGGGTGCGCGATGCCCATGCGGACAACGCCGCTGACCTGTTC
GTGCGGCCGTTGCTGATGGGGATCCTCTCGGAGCCCTGA

Upstream 100 bases:

>100_bases
CATTGGCGCGCAGGGAGCGGGGCGCCCGCTATAATCCGCGCAGGCACTGTGCCGCCTCACCACGTCCACTCGCAATATTG
CGCGACCACATCCCCCAGCC

Downstream 100 bases:

>100_bases
GCGCTAGCACACGCTCAAGTGTAGAGGTGGCAGGCCACCATCTGGCCATCCGGCTGCGCCTGCAGCGCCGGGTCTTCGCT
GCGGCAACGCGCCATCGCCA

Product: TetR/AcrR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; TetR-Family Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MSKDPAQARLTRRYVEKREAILDAAARRFNHQGVRGTTLSDVAEDVGLSTNSITYYYRKKEDLVVACLLRAIGEMVDIAS
AAQQQPAPRERVKAFIALFFERLARTATGERPELMSFREIRALPDSHADIAFDAYTDMFRRIRQLLRERPPADPAQRSAL
SARAHLLLSLATGAMSWVERYEPEDYPKVAQTVVDVLLHGIAAPSARWHAQMDVSALLPAPDRPETTQEAFLRAATELLN
EQGYRGASADRISARLNLTKGAFYHHNENKDDLISACVDRMFAVIRNTQTLVENGPGTGWDKLCAVSRALVQYQFSSQGP
LLRLTIYGALPEDMRKEKMLTMSRLSARIVRFLVLGMQDGSIRALDQSIAALQVNGMINAAVELSRWVRDAHADNAADLF
VRPLLMGILSEP

Sequences:

>Translated_412_residues
MSKDPAQARLTRRYVEKREAILDAAARRFNHQGVRGTTLSDVAEDVGLSTNSITYYYRKKEDLVVACLLRAIGEMVDIAS
AAQQQPAPRERVKAFIALFFERLARTATGERPELMSFREIRALPDSHADIAFDAYTDMFRRIRQLLRERPPADPAQRSAL
SARAHLLLSLATGAMSWVERYEPEDYPKVAQTVVDVLLHGIAAPSARWHAQMDVSALLPAPDRPETTQEAFLRAATELLN
EQGYRGASADRISARLNLTKGAFYHHNENKDDLISACVDRMFAVIRNTQTLVENGPGTGWDKLCAVSRALVQYQFSSQGP
LLRLTIYGALPEDMRKEKMLTMSRLSARIVRFLVLGMQDGSIRALDQSIAALQVNGMINAAVELSRWVRDAHADNAADLF
VRPLLMGILSEP
>Mature_411_residues
SKDPAQARLTRRYVEKREAILDAAARRFNHQGVRGTTLSDVAEDVGLSTNSITYYYRKKEDLVVACLLRAIGEMVDIASA
AQQQPAPRERVKAFIALFFERLARTATGERPELMSFREIRALPDSHADIAFDAYTDMFRRIRQLLRERPPADPAQRSALS
ARAHLLLSLATGAMSWVERYEPEDYPKVAQTVVDVLLHGIAAPSARWHAQMDVSALLPAPDRPETTQEAFLRAATELLNE
QGYRGASADRISARLNLTKGAFYHHNENKDDLISACVDRMFAVIRNTQTLVENGPGTGWDKLCAVSRALVQYQFSSQGPL
LRLTIYGALPEDMRKEKMLTMSRLSARIVRFLVLGMQDGSIRALDQSIAALQVNGMINAAVELSRWVRDAHADNAADLFV
RPLLMGILSEP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46005; Mature: 45874

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKDPAQARLTRRYVEKREAILDAAARRFNHQGVRGTTLSDVAEDVGLSTNSITYYYRKK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEECC
EDLVVACLLRAIGEMVDIASAAQQQPAPRERVKAFIALFFERLARTATGERPELMSFREI
CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RALPDSHADIAFDAYTDMFRRIRQLLRERPPADPAQRSALSARAHLLLSLATGAMSWVER
HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YEPEDYPKVAQTVVDVLLHGIAAPSARWHAQMDVSALLPAPDRPETTQEAFLRAATELLN
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHH
EQGYRGASADRISARLNLTKGAFYHHNENKDDLISACVDRMFAVIRNTQTLVENGPGTGW
HCCCCCCCCHHHHHHEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
DKLCAVSRALVQYQFSSQGPLLRLTIYGALPEDMRKEKMLTMSRLSARIVRFLVLGMQDG
HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SIRALDQSIAALQVNGMINAAVELSRWVRDAHADNAADLFVRPLLMGILSEP
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKDPAQARLTRRYVEKREAILDAAARRFNHQGVRGTTLSDVAEDVGLSTNSITYYYRKK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEECC
EDLVVACLLRAIGEMVDIASAAQQQPAPRERVKAFIALFFERLARTATGERPELMSFREI
CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RALPDSHADIAFDAYTDMFRRIRQLLRERPPADPAQRSALSARAHLLLSLATGAMSWVER
HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YEPEDYPKVAQTVVDVLLHGIAAPSARWHAQMDVSALLPAPDRPETTQEAFLRAATELLN
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHH
EQGYRGASADRISARLNLTKGAFYHHNENKDDLISACVDRMFAVIRNTQTLVENGPGTGW
HCCCCCCCCHHHHHHEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
DKLCAVSRALVQYQFSSQGPLLRLTIYGALPEDMRKEKMLTMSRLSARIVRFLVLGMQDG
HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SIRALDQSIAALQVNGMINAAVELSRWVRDAHADNAADLFVRPLLMGILSEP
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA