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The map label for this gene is ygiT [C]

Identifier: 116694356

GI number: 116694356

Start: 460831

End: 461121

Strand: Direct

Name: ygiT [C]

Synonym: H16_B0403

Alternate gene names: 116694356

Gene position: 460831-461121 (Clockwise)

Preceding gene: 116694355

Following gene: 116694362

Centisome position: 15.82

GC content: 62.89

Gene sequence:

>291_bases
ATGGCCACTGATAAGGAAATTGACCAATTCCAGGCTGACCTGCTGAAGTCGGTCAAGCAAATGAAAGCCGGCCAGGCCGC
CCGCGTCACGAAGGTCGAAGTCTCGCCCGTCGCGCACGCGCGCAAGCTTTCGGGCCTGTCGCAGAGCCAGTTCGGCGACC
TGATGGGCGTTTCTGTGCGTACCCTCCAGGAGTGGGAGCAAGGCCGCCGGCAACCCACAGGCGCAGCGCAGACCCTGCTG
CGCGTGGTGACGATGCATCCCGAGGTGCTGCGTGAGTTGCATAAGGCTTAG

Upstream 100 bases:

>100_bases
CTCGACGACGGGCAAATCTGGTTGCTCATCGCCTACACCAAGGCAAAGTTCGACAAACTCCCGACGGCGTTCCTCAACCA
ACTGCGACAAGGAGTCGAAG

Downstream 100 bases:

>100_bases
CGCGTCATCGGGGCGCGAAATCGGCGCTGAACCAGGCAAAATGGCCGGGCGCATGCCCGGCCATTTTGCATTCACTGCCA
ACGCATCCGGCGCTTATGCA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator XRE Family; Transcriptional Regulator; Helix-Turn-Helix Domain Protein; Helix-Turn-Helix XRE Family Protein; Xin-Antitoxin System Antitoxin Component Xre Family; Virulence Gene Repressor RsaL

Number of amino acids: Translated: 96; Mature: 95

Protein sequence:

>96_residues
MATDKEIDQFQADLLKSVKQMKAGQAARVTKVEVSPVAHARKLSGLSQSQFGDLMGVSVRTLQEWEQGRRQPTGAAQTLL
RVVTMHPEVLRELHKA

Sequences:

>Translated_96_residues
MATDKEIDQFQADLLKSVKQMKAGQAARVTKVEVSPVAHARKLSGLSQSQFGDLMGVSVRTLQEWEQGRRQPTGAAQTLL
RVVTMHPEVLRELHKA
>Mature_95_residues
ATDKEIDQFQADLLKSVKQMKAGQAARVTKVEVSPVAHARKLSGLSQSQFGDLMGVSVRTLQEWEQGRRQPTGAAQTLLR
VVTMHPEVLRELHKA

Specific function: Unknown

COG id: COG2944

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10651; Mature: 10520

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: PS50943 HTH_CROC1 ; PS51160 ACYLPHOSPHATASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATDKEIDQFQADLLKSVKQMKAGQAARVTKVEVSPVAHARKLSGLSQSQFGDLMGVSVR
CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
TLQEWEQGRRQPTGAAQTLLRVVTMHPEVLRELHKA
HHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure 
ATDKEIDQFQADLLKSVKQMKAGQAARVTKVEVSPVAHARKLSGLSQSQFGDLMGVSVR
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
TLQEWEQGRRQPTGAAQTLLRVVTMHPEVLRELHKA
HHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA