Click here to switch to the map view.

The map label for this gene is garP [C]

Identifier: 116694295

GI number: 116694295

Start: 384701

End: 385969

Strand: Direct

Name: garP [C]

Synonym: H16_B0341

Alternate gene names: 116694295

Gene position: 384701-385969 (Clockwise)

Preceding gene: 116694292

Following gene: 116694298

Centisome position: 13.21

GC content: 70.61

Gene sequence:

>1269_bases
GTGGCCGAGTCCGTCTGTTTTGCCCGCCCTGGTGGCAATTCCCTCGCGGCTTCCGCCGCTTCGCATCGCTGGAAAGTGTT
GGGCGTCGGCGTTGCCGCGAACGCCAGCTTCATCGCTGCCGCCAACGGGTTGCCCGCCACCGCGGTGTGGCTGCGCAGCG
CCTATCAGATCGACAACGGGGGGCTTGGCCTGCTGCTTGGTGCGTTGGGCATCGGCGCCGCGTTGTCCGAACTGCCGTGG
GGCGCAGCGGCCGACCGGTGGGGCGACCGTCGCGTCCTGCTGTACGGGCTCGGCGCCACCGCTCTCATACTGGCGGTGAT
GGCACTGTTCCTGGCCCCAAGGCCGGATCGCGTGCCGTCCTTGCCGGTGGCGATGGCCTGCATGGCGCTGCTGGGACTGG
CGGGCGGCAGCGTCAACGGGGCCAGCGGGCGGGCGGTGATGCGATGGTTCGCCGACGGCGAGCGCGGCCTGGCGATGAGT
ATCCGCCAGACGGCGGTGCCCCTCGGCGGCGGGCTAGGGGCGCTCGTGTTGCCGTGGCTGGCCTTTGCCATGGGCTTTCG
CTGGGTGTACGCAGTCCTGGCCGCGTTCTGCCTTGCCTCTGCCTGGCTGACCTGGCGATGGCTGCACGAACCCACGCATC
TCGCTGCCCCCGCGTCGGCACGACGCCATGCGCATGACAATGCCAGCCCGTTGCGCAGCCTGCGGGTCTGGCGCATTGCG
TTGGCCATCGGCATCCTGTGCGCGCCCCAGTTCGCGGTCTTGAGCTTCGCCTCGGTGTTCCTGCACGATGCGGCCCATGT
GGCTGTGTCGGGCATCGCCGCCACCCTTTGCGCTGTGCAGCTCGGCGCGATGGCGATGCGGATCTGGAGCGGCCGCCATA
CCGATCGGCGTGGCAACCGCCGTGCATGGCTGCGCCATTGCACGCTGATCGCCGCGCTGATGTTCGTGCCGCTGGCCCTC
TGCGCGGCGGTCGGGCAGGGTGTTCCTGCGACGCTGACCATGGTCGCGGTCGTGCTGGCTGGCATCGCGGTTTCGGCCTG
GCATGGGGTTGCCTACACCGAACTGGCGACGCAGGCGGGCGCGGAGCGGGCGGGTACGGCCCTCGGACTGGCCAATACGC
TGGTCTTCGCCGCGTACTTCGCTGCCCCTGCGGCGATTCCGCTACTGCTCGATAGCGGCGGCTGGGCCGGCGTCTGGCTC
CTGGCCGGGGCCTGCGCGGCGACGGCGTGGCCGCTTTTTCCCCGGGCTGGCGATGGTCCCGGCAACTGA

Upstream 100 bases:

>100_bases
TGCGGAAAAACGAAACAATTGGTCCCAAACTTTCTGATTTTCAAGACGAATATTGGTTGCAATACTGACGCCCTGTCAAC
AGCCTTATCGGAGGGCCGTC

Downstream 100 bases:

>100_bases
CTGACGTTTCCAGTCACTGCTTCGACCGGCGAGCAGCTTCCCATTAATAGGCATGCGCAGGGTTCTGAAAAGGAGAACCA
CTGCGACGGGATTTCGGAAC

Product: MFS family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MAESVCFARPGGNSLAASAASHRWKVLGVGVAANASFIAAANGLPATAVWLRSAYQIDNGGLGLLLGALGIGAALSELPW
GAAADRWGDRRVLLYGLGATALILAVMALFLAPRPDRVPSLPVAMACMALLGLAGGSVNGASGRAVMRWFADGERGLAMS
IRQTAVPLGGGLGALVLPWLAFAMGFRWVYAVLAAFCLASAWLTWRWLHEPTHLAAPASARRHAHDNASPLRSLRVWRIA
LAIGILCAPQFAVLSFASVFLHDAAHVAVSGIAATLCAVQLGAMAMRIWSGRHTDRRGNRRAWLRHCTLIAALMFVPLAL
CAAVGQGVPATLTMVAVVLAGIAVSAWHGVAYTELATQAGAERAGTALGLANTLVFAAYFAAPAAIPLLLDSGGWAGVWL
LAGACAATAWPLFPRAGDGPGN

Sequences:

>Translated_422_residues
MAESVCFARPGGNSLAASAASHRWKVLGVGVAANASFIAAANGLPATAVWLRSAYQIDNGGLGLLLGALGIGAALSELPW
GAAADRWGDRRVLLYGLGATALILAVMALFLAPRPDRVPSLPVAMACMALLGLAGGSVNGASGRAVMRWFADGERGLAMS
IRQTAVPLGGGLGALVLPWLAFAMGFRWVYAVLAAFCLASAWLTWRWLHEPTHLAAPASARRHAHDNASPLRSLRVWRIA
LAIGILCAPQFAVLSFASVFLHDAAHVAVSGIAATLCAVQLGAMAMRIWSGRHTDRRGNRRAWLRHCTLIAALMFVPLAL
CAAVGQGVPATLTMVAVVLAGIAVSAWHGVAYTELATQAGAERAGTALGLANTLVFAAYFAAPAAIPLLLDSGGWAGVWL
LAGACAATAWPLFPRAGDGPGN
>Mature_421_residues
AESVCFARPGGNSLAASAASHRWKVLGVGVAANASFIAAANGLPATAVWLRSAYQIDNGGLGLLLGALGIGAALSELPWG
AAADRWGDRRVLLYGLGATALILAVMALFLAPRPDRVPSLPVAMACMALLGLAGGSVNGASGRAVMRWFADGERGLAMSI
RQTAVPLGGGLGALVLPWLAFAMGFRWVYAVLAAFCLASAWLTWRWLHEPTHLAAPASARRHAHDNASPLRSLRVWRIAL
AIGILCAPQFAVLSFASVFLHDAAHVAVSGIAATLCAVQLGAMAMRIWSGRHTDRRGNRRAWLRHCTLIAALMFVPLALC
AAVGQGVPATLTMVAVVLAGIAVSAWHGVAYTELATQAGAERAGTALGLANTLVFAAYFAAPAAIPLLLDSGGWAGVWLL
AGACAATAWPLFPRAGDGPGN

Specific function: Uptake Of D-Galactarate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43552; Mature: 43421

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAESVCFARPGGNSLAASAASHRWKVLGVGVAANASFIAAANGLPATAVWLRSAYQIDNG
CCCCCEEECCCCCHHHHHHHCCCEEEEEEEEECCCCEEEECCCCCHHHHHHHHHHEECCC
GLGLLLGALGIGAALSELPWGAAADRWGDRRVLLYGLGATALILAVMALFLAPRPDRVPS
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCC
LPVAMACMALLGLAGGSVNGASGRAVMRWFADGERGLAMSIRQTAVPLGGGLGALVLPWL
CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
AFAMGFRWVYAVLAAFCLASAWLTWRWLHEPTHLAAPASARRHAHDNASPLRSLRVWRIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHCCCCHHHHHHHHHHHHH
LAIGILCAPQFAVLSFASVFLHDAAHVAVSGIAATLCAVQLGAMAMRIWSGRHTDRRGNR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
RAWLRHCTLIAALMFVPLALCAAVGQGVPATLTMVAVVLAGIAVSAWHGVAYTELATQAG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
AERAGTALGLANTLVFAAYFAAPAAIPLLLDSGGWAGVWLLAGACAATAWPLFPRAGDGP
HHHHCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCC
GN
CC
>Mature Secondary Structure 
AESVCFARPGGNSLAASAASHRWKVLGVGVAANASFIAAANGLPATAVWLRSAYQIDNG
CCCCEEECCCCCHHHHHHHCCCEEEEEEEEECCCCEEEECCCCCHHHHHHHHHHEECCC
GLGLLLGALGIGAALSELPWGAAADRWGDRRVLLYGLGATALILAVMALFLAPRPDRVPS
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCC
LPVAMACMALLGLAGGSVNGASGRAVMRWFADGERGLAMSIRQTAVPLGGGLGALVLPWL
CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
AFAMGFRWVYAVLAAFCLASAWLTWRWLHEPTHLAAPASARRHAHDNASPLRSLRVWRIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHCCCCHHHHHHHHHHHHH
LAIGILCAPQFAVLSFASVFLHDAAHVAVSGIAATLCAVQLGAMAMRIWSGRHTDRRGNR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
RAWLRHCTLIAALMFVPLALCAAVGQGVPATLTMVAVVLAGIAVSAWHGVAYTELATQAG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
AERAGTALGLANTLVFAAYFAAPAAIPLLLDSGGWAGVWLLAGACAATAWPLFPRAGDGP
HHHHCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCC
GN
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]