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The map label for this gene is aidB [H]

Identifier: 116694047

GI number: 116694047

Start: 100181

End: 101977

Strand: Direct

Name: aidB [H]

Synonym: H16_B0087

Alternate gene names: 116694047

Gene position: 100181-101977 (Clockwise)

Preceding gene: 116694042

Following gene: 116694048

Centisome position: 3.44

GC content: 71.34

Gene sequence:

>1797_bases
ATGCCATCCAGCGCCGTGCGCGACACCACACTTCAAGCCCCTTGCGCCGCATCGGCCGCTGCCCACCCGGTACCGGACCG
CCAGGGCGGCAGCCTGTTTGCCGCCGACCCCGACCTGCGCGCGCTGCTGCCGCTCTACCTGCCGCCCGACCTGTTCAACC
ACCTGCTGCCGCACCTGGAGCGCATGGGTGCGCTGGCCGGCGGCGTGCTCGACGAACTGGCCGGCGTGGCCGACCGCCAT
CCCCCCGAACTCACCTACCGTACCCGCGCGGGCGTGGATGCGCAGCGCATCGACAAGCATCCGGCCTATGTGGAGATGGA
GCGCGTGGCCTTTGCCGAATTCGGCCTGGCGGCGGCGTCGCATCGCGGCGGGGTGCTGGGCTGGGACAAGCCCATGCCGC
CAGCGGCTAAGTACGCACTCACATATCTGTTTGTGCAGGCCGAGTTCGGCCTGTGCTGCCCGCTCTCGATGACCGATTCG
CTGACGCGCACGCTGCGCAAGTTCGGCGACCCGGCGCTGGTCGGGCGCTACCTGCCCAACCTGACCACCCAGGTGTTCGA
TGATCTGTACCAGGGCGCGATGTTCATGACCGAGCAGGGCGCCGGCTCCGACGTCGCCGCCACTGCCACCCGCGCGGTGC
GCGACGCTTCGGCCGAGGGCGGCTGGCGCCTGCTGGGCGACAAGTGGTTCTGCTCCAACCCCGATGCCGCGCTGGCGATG
GTGCTGGCGCGCGTGGAGGATGAGGCCGGCAACGCCGTGCCGGGCCACAAGGGCGTGTCGCTGTTCCTGCTGCCGCGCAA
GCTGGCCGATGGCAGCGACAACCACTACCGCATCATCCGCCTGAAGGACAAGCTGGGCACGCGCTCGATGGCCAGCGGCG
AGATCCGGCTGGAAGGCGCGCATGCCTGGCTGGTCGGCGAACCCGGCCGCGGCTTCGTGCAGATGGCCGACATGATCAAC
AACTCGCGCCTGTCCAACGGCGTGCGCGCCGCCGGCCTGATGCGCCGCGCGCTGACCGAGGGCCTGTTCATCGCACGCGA
GCGCCAGGCGTTCGGCAAGCGCCTGCAGGACATGCCGCTGATGCGCCGCCAGCTGCTCAAGCTGACCCTGCCCACCGAGC
AGGCGCGCACCATGGTGTTCCAGACCGCCGAAGCGCTGCGCCGCGCAGATGCCGGCGAGGCCGACGCCTACCCGCTGATG
CGCATCCTGACGCCGCTGATCAAGTTCCGCGCCTGCCGCGATGCGCGCAAGGTCACCGGCGACGCCATGGAGATCCGCGG
CGGCTGCGGCTATATCGAGGAATGGAGTGATCCGCGCCTGGTGCGCGACGCCCACCTTGGCTCGATCTGGGAGGGCACCA
GCAATATCGTTGCGCTCGACGTGCTGCGCGCGGTCCGCCGCGAAGGCGCGCTGCCGGTGCTGCAGGCACACCTGGCTGGC
CTGCTGGCCGATACGCCGATGCATGCGGCGGCGCGTGCCGTGTTCGAACGCGCCATCGCCGCCGCTGCGAATCTGGCCGC
GCAAGCCGCTGAGGCCGGCGCCGACGGCGAACTGCTGGCGCGCCAGGCGGCCTCGGCGCTGTACCACGTCACCAGCGCGG
TGGCGATGGCCTGGGAGGCCGGGCGCATCGGCTCGGTGCGCCGCATGCGGCTGGCGCAGCTGGTGCTGCGCCATCGCGTG
CTGCCGCAGGACCCGCTGGCCGCGCAGGCCGAGCCCGAATGGCTGGCCGAGACCGTCGCGCCGGTTGACGGCACCGTGCG
TGCCGCCGGCGCGGTCGACCAGGTCAACGTGTTCTGA

Upstream 100 bases:

>100_bases
GATCAAGCCAATTTTAGAATTAGACGCGAATCCTTGGGGTTTCAATAATGGAGGTCAAAGGGGCCGCAAGCCGGCACCGT
CCAATCCCAGGAGACCCGCC

Downstream 100 bases:

>100_bases
CCGGATCCACGTCCGGCACCAATCCCCCGCAAAACCATCCTGCCCCGAGGCGGGAGACGTCCTATACCCAGGAGACAACG
CCATGAAACTCTGGCACCGC

Product: Acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 598; Mature: 597

Protein sequence:

>598_residues
MPSSAVRDTTLQAPCAASAAAHPVPDRQGGSLFAADPDLRALLPLYLPPDLFNHLLPHLERMGALAGGVLDELAGVADRH
PPELTYRTRAGVDAQRIDKHPAYVEMERVAFAEFGLAAASHRGGVLGWDKPMPPAAKYALTYLFVQAEFGLCCPLSMTDS
LTRTLRKFGDPALVGRYLPNLTTQVFDDLYQGAMFMTEQGAGSDVAATATRAVRDASAEGGWRLLGDKWFCSNPDAALAM
VLARVEDEAGNAVPGHKGVSLFLLPRKLADGSDNHYRIIRLKDKLGTRSMASGEIRLEGAHAWLVGEPGRGFVQMADMIN
NSRLSNGVRAAGLMRRALTEGLFIARERQAFGKRLQDMPLMRRQLLKLTLPTEQARTMVFQTAEALRRADAGEADAYPLM
RILTPLIKFRACRDARKVTGDAMEIRGGCGYIEEWSDPRLVRDAHLGSIWEGTSNIVALDVLRAVRREGALPVLQAHLAG
LLADTPMHAAARAVFERAIAAAANLAAQAAEAGADGELLARQAASALYHVTSAVAMAWEAGRIGSVRRMRLAQLVLRHRV
LPQDPLAAQAEPEWLAETVAPVDGTVRAAGAVDQVNVF

Sequences:

>Translated_598_residues
MPSSAVRDTTLQAPCAASAAAHPVPDRQGGSLFAADPDLRALLPLYLPPDLFNHLLPHLERMGALAGGVLDELAGVADRH
PPELTYRTRAGVDAQRIDKHPAYVEMERVAFAEFGLAAASHRGGVLGWDKPMPPAAKYALTYLFVQAEFGLCCPLSMTDS
LTRTLRKFGDPALVGRYLPNLTTQVFDDLYQGAMFMTEQGAGSDVAATATRAVRDASAEGGWRLLGDKWFCSNPDAALAM
VLARVEDEAGNAVPGHKGVSLFLLPRKLADGSDNHYRIIRLKDKLGTRSMASGEIRLEGAHAWLVGEPGRGFVQMADMIN
NSRLSNGVRAAGLMRRALTEGLFIARERQAFGKRLQDMPLMRRQLLKLTLPTEQARTMVFQTAEALRRADAGEADAYPLM
RILTPLIKFRACRDARKVTGDAMEIRGGCGYIEEWSDPRLVRDAHLGSIWEGTSNIVALDVLRAVRREGALPVLQAHLAG
LLADTPMHAAARAVFERAIAAAANLAAQAAEAGADGELLARQAASALYHVTSAVAMAWEAGRIGSVRRMRLAQLVLRHRV
LPQDPLAAQAEPEWLAETVAPVDGTVRAAGAVDQVNVF
>Mature_597_residues
PSSAVRDTTLQAPCAASAAAHPVPDRQGGSLFAADPDLRALLPLYLPPDLFNHLLPHLERMGALAGGVLDELAGVADRHP
PELTYRTRAGVDAQRIDKHPAYVEMERVAFAEFGLAAASHRGGVLGWDKPMPPAAKYALTYLFVQAEFGLCCPLSMTDSL
TRTLRKFGDPALVGRYLPNLTTQVFDDLYQGAMFMTEQGAGSDVAATATRAVRDASAEGGWRLLGDKWFCSNPDAALAMV
LARVEDEAGNAVPGHKGVSLFLLPRKLADGSDNHYRIIRLKDKLGTRSMASGEIRLEGAHAWLVGEPGRGFVQMADMINN
SRLSNGVRAAGLMRRALTEGLFIARERQAFGKRLQDMPLMRRQLLKLTLPTEQARTMVFQTAEALRRADAGEADAYPLMR
ILTPLIKFRACRDARKVTGDAMEIRGGCGYIEEWSDPRLVRDAHLGSIWEGTSNIVALDVLRAVRREGALPVLQAHLAGL
LADTPMHAAARAVFERAIAAAANLAAQAAEAGADGELLARQAASALYHVTSAVAMAWEAGRIGSVRRMRLAQLVLRHRVL
PQDPLAAQAEPEWLAETVAPVDGTVRAAGAVDQVNVF

Specific function: May help to prevent alkylation damage by protecting DNA and destroying alkylating agents [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=318, Percent_Identity=30.188679245283, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI4557233, Length=284, Percent_Identity=29.2253521126761, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI21361497, Length=445, Percent_Identity=25.8426966292135, Blast_Score=91, Evalue=4e-18,
Organism=Homo sapiens, GI226958412, Length=311, Percent_Identity=26.3665594855305, Blast_Score=89, Evalue=9e-18,
Organism=Homo sapiens, GI226958414, Length=313, Percent_Identity=26.1980830670927, Blast_Score=89, Evalue=9e-18,
Organism=Homo sapiens, GI4557235, Length=356, Percent_Identity=26.4044943820225, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI76496475, Length=356, Percent_Identity=26.4044943820225, Blast_Score=86, Evalue=1e-16,
Organism=Homo sapiens, GI4501857, Length=362, Percent_Identity=24.8618784530387, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI187960098, Length=276, Percent_Identity=29.3478260869565, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI4557231, Length=276, Percent_Identity=29.3478260869565, Blast_Score=74, Evalue=3e-13,
Organism=Escherichia coli, GI87082384, Length=412, Percent_Identity=35.6796116504854, Blast_Score=199, Evalue=5e-52,
Organism=Escherichia coli, GI87081958, Length=300, Percent_Identity=27.3333333333333, Blast_Score=77, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI86563381, Length=503, Percent_Identity=30.2186878727634, Blast_Score=210, Evalue=2e-54,
Organism=Caenorhabditis elegans, GI86563383, Length=503, Percent_Identity=30.2186878727634, Blast_Score=210, Evalue=2e-54,
Organism=Caenorhabditis elegans, GI17508101, Length=318, Percent_Identity=25.1572327044025, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17506239, Length=299, Percent_Identity=27.4247491638796, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17505929, Length=360, Percent_Identity=30, Blast_Score=93, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17538396, Length=361, Percent_Identity=25.207756232687, Blast_Score=92, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17551932, Length=314, Percent_Identity=30.5732484076433, Blast_Score=90, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17534899, Length=276, Percent_Identity=26.8115942028986, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17570075, Length=281, Percent_Identity=25.9786476868327, Blast_Score=80, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71990804, Length=213, Percent_Identity=24.8826291079812, Blast_Score=74, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17533517, Length=312, Percent_Identity=24.3589743589744, Blast_Score=73, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71985184, Length=297, Percent_Identity=23.5690235690236, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17569725, Length=272, Percent_Identity=25.7352941176471, Blast_Score=70, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71982178, Length=200, Percent_Identity=28.5, Blast_Score=69, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24666513, Length=321, Percent_Identity=23.3644859813084, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI21356377, Length=321, Percent_Identity=26.4797507788162, Blast_Score=91, Evalue=3e-18,
Organism=Drosophila melanogaster, GI281363737, Length=297, Percent_Identity=24.5791245791246, Blast_Score=90, Evalue=5e-18,
Organism=Drosophila melanogaster, GI21355753, Length=308, Percent_Identity=26.6233766233766, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24646207, Length=277, Percent_Identity=25.6317689530686, Blast_Score=82, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24660351, Length=272, Percent_Identity=28.6764705882353, Blast_Score=80, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M [H]

EC number: NA

Molecular weight: Translated: 64586; Mature: 64455

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSSAVRDTTLQAPCAASAAAHPVPDRQGGSLFAADPDLRALLPLYLPPDLFNHLLPHLE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHH
RMGALAGGVLDELAGVADRHPPELTYRTRAGVDAQRIDKHPAYVEMERVAFAEFGLAAAS
HHHHHHHHHHHHHHHHHCCCCCCCEEHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHC
HRGGVLGWDKPMPPAAKYALTYLFVQAEFGLCCPLSMTDSLTRTLRKFGDPALVGRYLPN
CCCCCCCCCCCCCHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCC
LTTQVFDDLYQGAMFMTEQGAGSDVAATATRAVRDASAEGGWRLLGDKWFCSNPDAALAM
HHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEECCEEECCCCHHHHHH
VLARVEDEAGNAVPGHKGVSLFLLPRKLADGSDNHYRIIRLKDKLGTRSMASGEIRLEGA
HHHHHHHHCCCCCCCCCCCEEEEEEHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEC
HAWLVGEPGRGFVQMADMINNSRLSNGVRAAGLMRRALTEGLFIARERQAFGKRLQDMPL
EEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
MRRQLLKLTLPTEQARTMVFQTAEALRRADAGEADAYPLMRILTPLIKFRACRDARKVTG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
DAMEIRGGCGYIEEWSDPRLVRDAHLGSIWEGTSNIVALDVLRAVRREGALPVLQAHLAG
CHHEECCCCCCCCCCCCCCEEHHHCCCCHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
LLADTPMHAAARAVFERAIAAAANLAAQAAEAGADGELLARQAASALYHVTSAVAMAWEA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GRIGSVRRMRLAQLVLRHRVLPQDPLAAQAEPEWLAETVAPVDGTVRAAGAVDQVNVF
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCEECCCCCCCCCCC
>Mature Secondary Structure 
PSSAVRDTTLQAPCAASAAAHPVPDRQGGSLFAADPDLRALLPLYLPPDLFNHLLPHLE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHH
RMGALAGGVLDELAGVADRHPPELTYRTRAGVDAQRIDKHPAYVEMERVAFAEFGLAAAS
HHHHHHHHHHHHHHHHHCCCCCCCEEHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHC
HRGGVLGWDKPMPPAAKYALTYLFVQAEFGLCCPLSMTDSLTRTLRKFGDPALVGRYLPN
CCCCCCCCCCCCCHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCC
LTTQVFDDLYQGAMFMTEQGAGSDVAATATRAVRDASAEGGWRLLGDKWFCSNPDAALAM
HHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEECCEEECCCCHHHHHH
VLARVEDEAGNAVPGHKGVSLFLLPRKLADGSDNHYRIIRLKDKLGTRSMASGEIRLEGA
HHHHHHHHCCCCCCCCCCCEEEEEEHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEC
HAWLVGEPGRGFVQMADMINNSRLSNGVRAAGLMRRALTEGLFIARERQAFGKRLQDMPL
EEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
MRRQLLKLTLPTEQARTMVFQTAEALRRADAGEADAYPLMRILTPLIKFRACRDARKVTG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
DAMEIRGGCGYIEEWSDPRLVRDAHLGSIWEGTSNIVALDVLRAVRREGALPVLQAHLAG
CHHEECCCCCCCCCCCCCCEEHHHCCCCHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
LLADTPMHAAARAVFERAIAAAANLAAQAAEAGADGELLARQAASALYHVTSAVAMAWEA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GRIGSVRRMRLAQLVLRHRVLPQDPLAAQAEPEWLAETVAPVDGTVRAAGAVDQVNVF
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961409; 7610040; 9278503 [H]