| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478389
Identifier: 113478389
GI number: 113478389
Start: 7743289
End: 7743768
Strand: Reverse
Name: 113478389
Synonym: Tery_5074
Alternate gene names: NA
Gene position: 7743768-7743289 (Counterclockwise)
Preceding gene: 113478390
Following gene: 113478388
Centisome position: 99.92
GC content: 31.04
Gene sequence:
>480_bases ATGAGTAACTTAGAAGATTCTATTGTTTTAATCAGAAGTGCAAAAAAAGCAAATGTTATTGGTACTGGATTTATATTTCA TAAACAACAGAATTATAGTTATCTGCTTACTTGTGCTCATGTTATTGAGGGTGTGGGTGGAGAAGAAAATATAAGGGTGA ATAATCTTCCAGCGGAAGTTATAAAAATAGGAGATGTTCAAGGTTTTGATGTAGCTATTTTAAAAATCAATACAACTTTT TTAGCTTCATCCTTGAACTTAAGGATTTTAGATGGAAAGGAAGGAAAAAAATTAGAAGTTAAAATTCCTGGCTATTATCT TTTTGGACAAAATAACGCGCTTCGTCGTCAAACAATAAGAGGAGAAATGATAGTTGAGGTTGATGGAGAAAAAGCATTAC AAATAATAGAGAATGTAACAGAAAAAGTTGCAGTTGGAAAGTTAGAGATAAAAAAAAGGAATTCTTCGTTCAGGTTATAG
Upstream 100 bases:
>100_bases GGTTTAAATTTTGAGGGGCAGGGTAACATCTATATTACTAAAGGAAAGGGGGGTACGAATTTAAAAGTTAAGTTAGTTTT GAAACCTAAAAAGTTAGAAA
Downstream 100 bases:
>100_bases TGGTGCCCCCGTTTATGATATTAATAAAAAATCAGTTGTGGGTCTAGTTACTCATAAAATTGATGTTGATGGAAAAGGAA AAGGAAAGTCTGGTGTAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 159; Mature: 158
Protein sequence:
>159_residues MSNLEDSIVLIRSAKKANVIGTGFIFHKQQNYSYLLTCAHVIEGVGGEENIRVNNLPAEVIKIGDVQGFDVAILKINTTF LASSLNLRILDGKEGKKLEVKIPGYYLFGQNNALRRQTIRGEMIVEVDGEKALQIIENVTEKVAVGKLEIKKRNSSFRL
Sequences:
>Translated_159_residues MSNLEDSIVLIRSAKKANVIGTGFIFHKQQNYSYLLTCAHVIEGVGGEENIRVNNLPAEVIKIGDVQGFDVAILKINTTF LASSLNLRILDGKEGKKLEVKIPGYYLFGQNNALRRQTIRGEMIVEVDGEKALQIIENVTEKVAVGKLEIKKRNSSFRL >Mature_158_residues SNLEDSIVLIRSAKKANVIGTGFIFHKQQNYSYLLTCAHVIEGVGGEENIRVNNLPAEVIKIGDVQGFDVAILKINTTFL ASSLNLRILDGKEGKKLEVKIPGYYLFGQNNALRRQTIRGEMIVEVDGEKALQIIENVTEKVAVGKLEIKKRNSSFRL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17688; Mature: 17557
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNLEDSIVLIRSAKKANVIGTGFIFHKQQNYSYLLTCAHVIEGVGGEENIRVNNLPAEV CCCCCCEEEEEECCCCCCEEEEEEEEEECCCCEEEEEEHHHHHCCCCCCCEEEECCCCEE IKIGDVQGFDVAILKINTTFLASSLNLRILDGKEGKKLEVKIPGYYLFGQNNALRRQTIR EEECCCCCCEEEEEEEEEEEEECCCEEEEEECCCCCEEEEEECCEEEEECCCCHHHEECC GEMIVEVDGEKALQIIENVTEKVAVGKLEIKKRNSSFRL CEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCCC >Mature Secondary Structure SNLEDSIVLIRSAKKANVIGTGFIFHKQQNYSYLLTCAHVIEGVGGEENIRVNNLPAEV CCCCCEEEEEECCCCCCEEEEEEEEEECCCCEEEEEEHHHHHCCCCCCCEEEECCCCEE IKIGDVQGFDVAILKINTTFLASSLNLRILDGKEGKKLEVKIPGYYLFGQNNALRRQTIR EEECCCCCCEEEEEEEEEEEEECCCEEEEEECCCCCEEEEEECCEEEEECCCCHHHEECC GEMIVEVDGEKALQIIENVTEKVAVGKLEIKKRNSSFRL CEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA