| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478388
Identifier: 113478388
GI number: 113478388
Start: 7741452
End: 7743251
Strand: Reverse
Name: 113478388
Synonym: Tery_5073
Alternate gene names: NA
Gene position: 7743251-7741452 (Counterclockwise)
Preceding gene: 113478389
Following gene: 113478387
Centisome position: 99.91
GC content: 30.72
Gene sequence:
>1800_bases GTGGGTCTAGTTACTCATAAAATTGATGTTGATGGAAAAGGAAAAGGAAAGTCTGGTGTAGCGATATCAATAGAAGCTTT AGAAAAAATTTGGCCTGAAATACCTGCTAGTATTTCTCGGAAAATTACACGAGAATCACTAAAGAATCCTATTGATTCAA CTCATGGAAATAAAATACCAAAGTGGTGGCTTACACATTTTTTGCCTTACTGTCTTTTTTTCGTTTTTCTATTAGTAATA TATCAGAAAATATTAGACATATTTAAGAAAATTGATACAAATCAACCTCAAAATATTTCTCAAAATAATTCTGAAAATAA TCCTAAAAGTAAAAGTATTTATGATCTTTGTCCTACAGAATTTCAGTTCTTAACTTGTGGTGAAAAAGAGCAAGGTATTA CTATTAATTTTCCTGTAAACAGCGCATTTTCAACAGAAGAAAGGCGTGGGAGAGATGAATTAGCTAAAAGGAATTATAAA CAAGCTGTTGAATATTTAAAAGAAGCATGGGAAGGAGAGGATGGAGATAAAGATCCTTCTCTTTTAATTGCTTTGAATAA TGCCAAAGTTATGCTAGATATTCAACAAGGAGACTTACCTAGAAACCAGGTCTATGCAATCAGTGTTGCTATTCCTTTTA GTCACACCCTAAGATATGTAAGTAAGAATATACTTAGAGGGATAGCTTGGAAACAAGAGGAGTTTAATAATAAATCTGAT GATAATAATGAAGATTGGAAATTATTAGTGTTAATGGCTGATGATTCTAACGACGGAGAACAAGCTAAAAAAATAGCTGA CGAAATAGGAACCTATAATTCTACTTTAGATAATCCTATTTTAGGATTTATAGGTCATTATTCTTCCAGAGCTACAATCA ATGTAATTAATAAATATCATAAACTTAAAATAAATCAAATTACACCAAGTGCTACCTCTACTAGAGCAGACCTAAAAGAT ACTTATAAAAAGGTATTTAAAAGTGAAAATTTGTCGAATTCTCAACTAAATTTTTCATTTTTCTTTAGAACTATTGGAAC AACAAAAGAAGCGATGGATGCAGTTAGAAAGTACATTGATAATGAGAATCTAGAAATAAAAAATGTAATTATTTTTAGGA ATAGTACCGATGTTTTTTCTCTTTCTTCATCTTCTGAAGCAAAAAAACAACTCCTAGAAAGGATACAGAAAGACAATATT ACAGAGGTTGAATTATTTCAAAAAAATCCATTAGATTTGAGAGAAACACTTAAAAGATACAAAAATAATCCTTTACGTAA TGAGACAAATACAGTTATTTTTTTATTTATGGGTGCATACACTGAATCCCAAAGAGGTCAAGTTAAAGCAATTATTGAAG AAAATAAAGGAGATTTTTTACTGATTGGTAATAGTCCTGTGTATACTCCAGATTTTTTGACAAAATTCGACAAGTCAGTA CTGAATAACATAATAATTAGAAGATTTTGGGAACCCTCTGAGTCAGATCAAAAATTTAAAAATTTTCAGAGTTTTTGGAA GACAGAGGATTATTTAATCACGCGCATTGGCACATCTTATGATGCGACTGAAATGTTCATTCGAGCAATTTCTCAACAAC ATCAAAGCGTAGGAACTCCTACACCAGAAGGAATCAATAATGCTTTGTTAAATACTGATTTTATAGGGATGACAGGAAAA GTTAAAATTATTAAAGATGGGCCAAATAAAGGCGATCGCCAAGGTGCTAATTTTTATTTAATTAAACCATATTGCGAGGA AAATGGTGAATGTAGATGGATGAGGTTAAACCCATATTAG
Upstream 100 bases:
>100_bases ACAGAAAAAGTTGCAGTTGGAAAGTTAGAGATAAAAAAAAGGAATTCTTCGTTCAGGTTATAGTGGTGCCCCCGTTTATG ATATTAATAAAAAATCAGTT
Downstream 100 bases:
>100_bases GAAGAAAATTAGGGCTAAAAGAGGACGTCATGACAGCTCCTGGAACAAGGATGTGAAAACCCCTATCTATAAAGAATATT AAGTCTATAAATTAGCTCTT
Product: branched-chain amino acid ABC transporter periplasmic component-like protein
Products: NA
Alternate protein names: Serine/Threonine Kinase
Number of amino acids: Translated: 599; Mature: 598
Protein sequence:
>599_residues MGLVTHKIDVDGKGKGKSGVAISIEALEKIWPEIPASISRKITRESLKNPIDSTHGNKIPKWWLTHFLPYCLFFVFLLVI YQKILDIFKKIDTNQPQNISQNNSENNPKSKSIYDLCPTEFQFLTCGEKEQGITINFPVNSAFSTEERRGRDELAKRNYK QAVEYLKEAWEGEDGDKDPSLLIALNNAKVMLDIQQGDLPRNQVYAISVAIPFSHTLRYVSKNILRGIAWKQEEFNNKSD DNNEDWKLLVLMADDSNDGEQAKKIADEIGTYNSTLDNPILGFIGHYSSRATINVINKYHKLKINQITPSATSTRADLKD TYKKVFKSENLSNSQLNFSFFFRTIGTTKEAMDAVRKYIDNENLEIKNVIIFRNSTDVFSLSSSSEAKKQLLERIQKDNI TEVELFQKNPLDLRETLKRYKNNPLRNETNTVIFLFMGAYTESQRGQVKAIIEENKGDFLLIGNSPVYTPDFLTKFDKSV LNNIIIRRFWEPSESDQKFKNFQSFWKTEDYLITRIGTSYDATEMFIRAISQQHQSVGTPTPEGINNALLNTDFIGMTGK VKIIKDGPNKGDRQGANFYLIKPYCEENGECRWMRLNPY
Sequences:
>Translated_599_residues MGLVTHKIDVDGKGKGKSGVAISIEALEKIWPEIPASISRKITRESLKNPIDSTHGNKIPKWWLTHFLPYCLFFVFLLVI YQKILDIFKKIDTNQPQNISQNNSENNPKSKSIYDLCPTEFQFLTCGEKEQGITINFPVNSAFSTEERRGRDELAKRNYK QAVEYLKEAWEGEDGDKDPSLLIALNNAKVMLDIQQGDLPRNQVYAISVAIPFSHTLRYVSKNILRGIAWKQEEFNNKSD DNNEDWKLLVLMADDSNDGEQAKKIADEIGTYNSTLDNPILGFIGHYSSRATINVINKYHKLKINQITPSATSTRADLKD TYKKVFKSENLSNSQLNFSFFFRTIGTTKEAMDAVRKYIDNENLEIKNVIIFRNSTDVFSLSSSSEAKKQLLERIQKDNI TEVELFQKNPLDLRETLKRYKNNPLRNETNTVIFLFMGAYTESQRGQVKAIIEENKGDFLLIGNSPVYTPDFLTKFDKSV LNNIIIRRFWEPSESDQKFKNFQSFWKTEDYLITRIGTSYDATEMFIRAISQQHQSVGTPTPEGINNALLNTDFIGMTGK VKIIKDGPNKGDRQGANFYLIKPYCEENGECRWMRLNPY >Mature_598_residues GLVTHKIDVDGKGKGKSGVAISIEALEKIWPEIPASISRKITRESLKNPIDSTHGNKIPKWWLTHFLPYCLFFVFLLVIY QKILDIFKKIDTNQPQNISQNNSENNPKSKSIYDLCPTEFQFLTCGEKEQGITINFPVNSAFSTEERRGRDELAKRNYKQ AVEYLKEAWEGEDGDKDPSLLIALNNAKVMLDIQQGDLPRNQVYAISVAIPFSHTLRYVSKNILRGIAWKQEEFNNKSDD NNEDWKLLVLMADDSNDGEQAKKIADEIGTYNSTLDNPILGFIGHYSSRATINVINKYHKLKINQITPSATSTRADLKDT YKKVFKSENLSNSQLNFSFFFRTIGTTKEAMDAVRKYIDNENLEIKNVIIFRNSTDVFSLSSSSEAKKQLLERIQKDNIT EVELFQKNPLDLRETLKRYKNNPLRNETNTVIFLFMGAYTESQRGQVKAIIEENKGDFLLIGNSPVYTPDFLTKFDKSVL NNIIIRRFWEPSESDQKFKNFQSFWKTEDYLITRIGTSYDATEMFIRAISQQHQSVGTPTPEGINNALLNTDFIGMTGKV KIIKDGPNKGDRQGANFYLIKPYCEENGECRWMRLNPY
Specific function: Unknown
COG id: COG0683
COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68758; Mature: 68626
Theoretical pI: Translated: 8.38; Mature: 8.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLVTHKIDVDGKGKGKSGVAISIEALEKIWPEIPASISRKITRESLKNPIDSTHGNKIP CCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCH KWWLTHFLPYCLFFVFLLVIYQKILDIFKKIDTNQPQNISQNNSENNPKSKSIYDLCPTE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCC FQFLTCGEKEQGITINFPVNSAFSTEERRGRDELAKRNYKQAVEYLKEAWEGEDGDKDPS EEEEECCCCCCCEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE LLIALNNAKVMLDIQQGDLPRNQVYAISVAIPFSHTLRYVSKNILRGIAWKQEEFNNKSD EEEEEECCEEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCC DNNEDWKLLVLMADDSNDGEQAKKIADEIGTYNSTLDNPILGFIGHYSSRATINVINKYH CCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHH KLKINQITPSATSTRADLKDTYKKVFKSENLSNSQLNFSFFFRTIGTTKEAMDAVRKYID EEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEHEEEEEHHCCCHHHHHHHHHHHC NENLEIKNVIIFRNSTDVFSLSSSSEAKKQLLERIQKDNITEVELFQKNPLDLRETLKRY CCCCEEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH KNNPLRNETNTVIFLFMGAYTESQRGQVKAIIEENKGDFLLIGNSPVYTPDFLTKFDKSV CCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHH LNNIIIRRFWEPSESDQKFKNFQSFWKTEDYLITRIGTSYDATEMFIRAISQQHQSVGTP HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC TPEGINNALLNTDFIGMTGKVKIIKDGPNKGDRQGANFYLIKPYCEENGECRWMRLNPY CCCCCCHHHCCCCEECCCCEEEEEECCCCCCCCCCCCEEEEEHHCCCCCCEEEEEECCC >Mature Secondary Structure GLVTHKIDVDGKGKGKSGVAISIEALEKIWPEIPASISRKITRESLKNPIDSTHGNKIP CCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCH KWWLTHFLPYCLFFVFLLVIYQKILDIFKKIDTNQPQNISQNNSENNPKSKSIYDLCPTE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCC FQFLTCGEKEQGITINFPVNSAFSTEERRGRDELAKRNYKQAVEYLKEAWEGEDGDKDPS EEEEECCCCCCCEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE LLIALNNAKVMLDIQQGDLPRNQVYAISVAIPFSHTLRYVSKNILRGIAWKQEEFNNKSD EEEEEECCEEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCC DNNEDWKLLVLMADDSNDGEQAKKIADEIGTYNSTLDNPILGFIGHYSSRATINVINKYH CCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHH KLKINQITPSATSTRADLKDTYKKVFKSENLSNSQLNFSFFFRTIGTTKEAMDAVRKYID EEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEHEEEEEHHCCCHHHHHHHHHHHC NENLEIKNVIIFRNSTDVFSLSSSSEAKKQLLERIQKDNITEVELFQKNPLDLRETLKRY CCCCEEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH KNNPLRNETNTVIFLFMGAYTESQRGQVKAIIEENKGDFLLIGNSPVYTPDFLTKFDKSV CCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHH LNNIIIRRFWEPSESDQKFKNFQSFWKTEDYLITRIGTSYDATEMFIRAISQQHQSVGTP HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC TPEGINNALLNTDFIGMTGKVKIIKDGPNKGDRQGANFYLIKPYCEENGECRWMRLNPY CCCCCCHHHCCCCEECCCCEEEEEECCCCCCCCCCCCEEEEEHHCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA