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The map label for this gene is cpcA [H]

Identifier: 113478368

GI number: 113478368

Start: 7708849

End: 7709337

Strand: Reverse

Name: cpcA [H]

Synonym: Tery_5048

Alternate gene names: 113478368

Gene position: 7709337-7708849 (Counterclockwise)

Preceding gene: 113478369

Following gene: 113478367

Centisome position: 99.47

GC content: 41.92

Gene sequence:

>489_bases
ATGAAAACTCCTCTAACTGAAGCAGTAAGTGCTGCTGATTCTCAAGGTCGCTTTCTAACTAACGTAGAACTCAGTGCTGC
CTTAGGTCGTTTTGGTCGTGCTCAGGCTTGCTTAGAAGCTGCTAAAACTCTGAGTGAGAAGTCTCAAGCCTTGATTGATG
GAGCTGCTACAGCAGTATACAATAAGTTCCCCTATACTACTACTATGCAAGGACCAAACTATGCTTCTACTGAAATAGGA
AAGCAGAAGTGTTCCCGCGATATTGGCTACTATCTGCGGATGGTAACATATTGTCTGATTGCTGGTGGTACAGGTCCTAT
GGATGAGATACTCATTGCAGGAATAAGTGAAATCAATAGCACTTTTGAGTTGTCTCCTAGCTGGTACATTGAAGCTCTTA
AGTATATTAAGGCTAATCACGGTATTACTGGTCAAGGTGCAACTGAAGCCAATAATTACATTGATTATGCGATTAACGCT
CTAAGCTAG

Upstream 100 bases:

>100_bases
AAAAGAAACCAAGTTAAGTGATAGCTCTCAGCATCTTTATGCCTTCAAAAGTTTTACCAAATATAACTGTAATCAGAATA
ATAACTTAAATACCTTAAAA

Downstream 100 bases:

>100_bases
TAGTTAAAATGTTAACTAAGTGGTGAATGTAAAATTAATCTTTACTAACTTAACTACCCTAAGCTAATTTTAATATTAAA
CGTAGCCGGGACAGTTATAT

Product: phycocyanin subunit alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MKTPLTEAVSAADSQGRFLTNVELSAALGRFGRAQACLEAAKTLSEKSQALIDGAATAVYNKFPYTTTMQGPNYASTEIG
KQKCSRDIGYYLRMVTYCLIAGGTGPMDEILIAGISEINSTFELSPSWYIEALKYIKANHGITGQGATEANNYIDYAINA
LS

Sequences:

>Translated_162_residues
MKTPLTEAVSAADSQGRFLTNVELSAALGRFGRAQACLEAAKTLSEKSQALIDGAATAVYNKFPYTTTMQGPNYASTEIG
KQKCSRDIGYYLRMVTYCLIAGGTGPMDEILIAGISEINSTFELSPSWYIEALKYIKANHGITGQGATEANNYIDYAINA
LS
>Mature_162_residues
MKTPLTEAVSAADSQGRFLTNVELSAALGRFGRAQACLEAAKTLSEKSQALIDGAATAVYNKFPYTTTMQGPNYASTEIG
KQKCSRDIGYYLRMVTYCLIAGGTGPMDEILIAGISEINSTFELSPSWYIEALKYIKANHGITGQGATEANNYIDYAINA
LS

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Part of the phycobilisome rod (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128
- InterPro:   IPR006246 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 17398; Mature: 17398

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPLTEAVSAADSQGRFLTNVELSAALGRFGRAQACLEAAKTLSEKSQALIDGAATAVY
CCCCHHHHHHHCCCCCCEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NKFPYTTTMQGPNYASTEIGKQKCSRDIGYYLRMVTYCLIAGGTGPMDEILIAGISEINS
HCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
TFELSPSWYIEALKYIKANHGITGQGATEANNYIDYAINALS
EEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCC
>Mature Secondary Structure
MKTPLTEAVSAADSQGRFLTNVELSAALGRFGRAQACLEAAKTLSEKSQALIDGAATAVY
CCCCHHHHHHHCCCCCCEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NKFPYTTTMQGPNYASTEIGKQKCSRDIGYYLRMVTYCLIAGGTGPMDEILIAGISEINS
HCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
TFELSPSWYIEALKYIKANHGITGQGATEANNYIDYAINALS
EEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]