Click here to switch to the map view.

The map label for this gene is cpcF1 [H]

Identifier: 113478366

GI number: 113478366

Start: 7706972

End: 7707616

Strand: Reverse

Name: cpcF1 [H]

Synonym: Tery_5046

Alternate gene names: 113478366

Gene position: 7707616-7706972 (Counterclockwise)

Preceding gene: 113478367

Following gene: 113478365

Centisome position: 99.45

GC content: 36.74

Gene sequence:

>645_bases
ATGAATAATCAACTTTCAATAATAGATAATCAATTAATCAGAGCAGTTGAAGAAGCAGACTCTTCTCAAACTTTAATAGA
TGCGGTTAAAGATTTAGCAGAAGCTCATATCAAAGAAGCTATCCCAATATTAATTAAGGTATTGGGTTATAATAACCCTG
GTGCAGCAGTTGCAGCAGTTGATGGATTAGTTGAAATAGGGGAACCTGCAGTACTCAAACTTCTAGAAACACTTGATGGT
TATAACTATGGTGCTAGAGCTTGGGCAATAAGAGCATTAGCGGGTATTGGTGACCCTCGTGGGTTGGAAATATTGTTGGA
TAGTGCAGCAAATGATTTTTCTTTTAGTGTACGAAGGGCTGCAGCTAGAGGTTTAGGTTTTATTCATTGGGAAAAATTAT
CAGAAACAGAAATAAATCAAGCTCAACAGCGTGTTTTTCAAATCCTGTTGCAAGTATCTCAAGATCCAGAATGGGTAGTG
CGTTATGCTGCTGTTGTAGGTTTGCAAGGTTTAGCAAAAGTGGTTAAAGTTAGTGGTCAAAGCTGGTTTAAAGATATTTT
AACTGGTATTCATAAAATTGGTGATACAGATACAACTTTAGCAGTTAGAGCTAGGGCGCAAATTGCTATTGAAAATTTGT
GTTGA

Upstream 100 bases:

>100_bases
CTCTAATGGACTCGCTTCTATAAAACCTTCATTGATACCTCTTATACTGAAAAGTGACTACAAAAATTTTTTTTTAGAAG
CAATTTAAGTCTAAGTAATA

Downstream 100 bases:

>100_bases
AAAAATAGAGAGAAGATATTAGAGAAAGATTCTATAAATATTGAAAATGGTTAGATTTTGTTGATTTCCAGAATGATTTT
TTTTTGATTTATTTGAGAGA

Product: heat domain-containing protein

Products: NA

Alternate protein names: Phycocyanin-1 operon protein CpcF [H]

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MNNQLSIIDNQLIRAVEEADSSQTLIDAVKDLAEAHIKEAIPILIKVLGYNNPGAAVAAVDGLVEIGEPAVLKLLETLDG
YNYGARAWAIRALAGIGDPRGLEILLDSAANDFSFSVRRAAARGLGFIHWEKLSETEINQAQQRVFQILLQVSQDPEWVV
RYAAVVGLQGLAKVVKVSGQSWFKDILTGIHKIGDTDTTLAVRARAQIAIENLC

Sequences:

>Translated_214_residues
MNNQLSIIDNQLIRAVEEADSSQTLIDAVKDLAEAHIKEAIPILIKVLGYNNPGAAVAAVDGLVEIGEPAVLKLLETLDG
YNYGARAWAIRALAGIGDPRGLEILLDSAANDFSFSVRRAAARGLGFIHWEKLSETEINQAQQRVFQILLQVSQDPEWVV
RYAAVVGLQGLAKVVKVSGQSWFKDILTGIHKIGDTDTTLAVRARAQIAIENLC
>Mature_214_residues
MNNQLSIIDNQLIRAVEEADSSQTLIDAVKDLAEAHIKEAIPILIKVLGYNNPGAAVAAVDGLVEIGEPAVLKLLETLDG
YNYGARAWAIRALAGIGDPRGLEILLDSAANDFSFSVRRAAARGLGFIHWEKLSETEINQAQQRVFQILLQVSQDPEWVV
RYAAVVGLQGLAKVVKVSGQSWFKDILTGIHKIGDTDTTLAVRARAQIAIENLC

Specific function: Required for the chromophorylation of the CpcA gene product [H]

COG id: COG1413

COG function: function code C; FOG: HEAT repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcE/RpcE/PecE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR004155 [H]

Pfam domain/function: PF03130 HEAT_PBS [H]

EC number: 4.-.-.-

Molecular weight: Translated: 23210; Mature: 23210

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNQLSIIDNQLIRAVEEADSSQTLIDAVKDLAEAHIKEAIPILIKVLGYNNPGAAVAAV
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
DGLVEIGEPAVLKLLETLDGYNYGARAWAIRALAGIGDPRGLEILLDSAANDFSFSVRRA
HHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHEECCCCCHHHHHHHH
AARGLGFIHWEKLSETEINQAQQRVFQILLQVSQDPEWVVRYAAVVGLQGLAKVVKVSGQ
HHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCH
SWFKDILTGIHKIGDTDTTLAVRARAQIAIENLC
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNNQLSIIDNQLIRAVEEADSSQTLIDAVKDLAEAHIKEAIPILIKVLGYNNPGAAVAAV
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
DGLVEIGEPAVLKLLETLDGYNYGARAWAIRALAGIGDPRGLEILLDSAANDFSFSVRRA
HHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHEECCCCCHHHHHHHH
AARGLGFIHWEKLSETEINQAQQRVFQILLQVSQDPEWVVRYAAVVGLQGLAKVVKVSGQ
HHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCH
SWFKDILTGIHKIGDTDTTLAVRARAQIAIENLC
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA