| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478317
Identifier: 113478317
GI number: 113478317
Start: 7632295
End: 7633098
Strand: Reverse
Name: 113478317
Synonym: Tery_4991
Alternate gene names: NA
Gene position: 7633098-7632295 (Counterclockwise)
Preceding gene: 113478333
Following gene: 113478311
Centisome position: 98.49
GC content: 30.35
Gene sequence:
>804_bases ATGGCTAATTTTATCTTACTATTTCTGTTAATTATTACTCAGGTTTTAGGAGATATTTTCTTAAGCAAGGCTATGAAAAT TTTTGGGGAAGTTAATCTAGTTAACTCTGAAAGTTGGATGCCATTCATAATTTACTTACTCACAAGTTTCTGGGTTTGGT TAGGAGTAATTACTCTGATTTTTTGCCTGGTTTTATACTTAACTGTTCTTTCTAAACTTGACCTAAGTTATATACTTTCA ATCCATTCTTTAACTTATTTATTAAATGCTTTATTTGCTTGGTTGATTTTGGATGAAACAATTTCCAATATGCGGTTTTT GGGGACTTTGATTATAACTATTGGTGTATTTATTGTTGGTTTAAGTAAAAGTCTTTATGAAGATAGACAACGTTATAATT TTAATATCCTATTGATGGGATTATCTTTAAGTTTTTATATGTCTAAAACTTGGTGGGCGATCGCTATTATTGCTTTGGCT GATTCTACTGGAGATTTATGTCTGGCTAGAGGTATGAAACAAGTCGGAGAAGTAAATTTTAAATCTCTCAATGGTCTATT TGAGCAAATAGGTAAAGTGATTATAAATCCCTTGATTATGCTGGGTGTTCTTTGTCAAGCAATTGCTTTTTTATCTTTTA TTTTAGTGTTAAGTTGGGCAGATCTTAGTTTTGTTCGTCCGGCAACTGCATTAACTTATATTTGTAGTATTTTAGGGGCT AAGTTTTGGTTAAAAGAAAAGGTTTCTCTGGGTAGATTTATTGGTATTGTTTTTATTGTTATTGGTCTGATAATTAATAG ATAA
Upstream 100 bases:
>100_bases ATAATTAATAATTTGATAATTAAAGTATTATCTAAGTATAGTATTTTTTTGAATGGGATTATAATAATAAGTTGTTTAAA TACACAAATGCTTGTTATCT
Downstream 100 bases:
>100_bases TTAGTAAAGTAGGCATATTGAACACTGTCATTTTCTTCTAAGTTTTGATTTTCCCCAGGGGAGAAGGGGGGGGTTGACTT TTGGCTTCTTATTTTTAATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 267; Mature: 266
Protein sequence:
>267_residues MANFILLFLLIITQVLGDIFLSKAMKIFGEVNLVNSESWMPFIIYLLTSFWVWLGVITLIFCLVLYLTVLSKLDLSYILS IHSLTYLLNALFAWLILDETISNMRFLGTLIITIGVFIVGLSKSLYEDRQRYNFNILLMGLSLSFYMSKTWWAIAIIALA DSTGDLCLARGMKQVGEVNFKSLNGLFEQIGKVIINPLIMLGVLCQAIAFLSFILVLSWADLSFVRPATALTYICSILGA KFWLKEKVSLGRFIGIVFIVIGLIINR
Sequences:
>Translated_267_residues MANFILLFLLIITQVLGDIFLSKAMKIFGEVNLVNSESWMPFIIYLLTSFWVWLGVITLIFCLVLYLTVLSKLDLSYILS IHSLTYLLNALFAWLILDETISNMRFLGTLIITIGVFIVGLSKSLYEDRQRYNFNILLMGLSLSFYMSKTWWAIAIIALA DSTGDLCLARGMKQVGEVNFKSLNGLFEQIGKVIINPLIMLGVLCQAIAFLSFILVLSWADLSFVRPATALTYICSILGA KFWLKEKVSLGRFIGIVFIVIGLIINR >Mature_266_residues ANFILLFLLIITQVLGDIFLSKAMKIFGEVNLVNSESWMPFIIYLLTSFWVWLGVITLIFCLVLYLTVLSKLDLSYILSI HSLTYLLNALFAWLILDETISNMRFLGTLIITIGVFIVGLSKSLYEDRQRYNFNILLMGLSLSFYMSKTWWAIAIIALAD STGDLCLARGMKQVGEVNFKSLNGLFEQIGKVIINPLIMLGVLCQAIAFLSFILVLSWADLSFVRPATALTYICSILGAK FWLKEKVSLGRFIGIVFIVIGLIINR
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30124; Mature: 29993
Theoretical pI: Translated: 8.86; Mature: 8.86
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANFILLFLLIITQVLGDIFLSKAMKIFGEVNLVNSESWMPFIIYLLTSFWVWLGVITLI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH FCLVLYLTVLSKLDLSYILSIHSLTYLLNALFAWLILDETISNMRFLGTLIITIGVFIVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSKSLYEDRQRYNFNILLMGLSLSFYMSKTWWAIAIIALADSTGDLCLARGMKQVGEVNF HHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCH KSLNGLFEQIGKVIINPLIMLGVLCQAIAFLSFILVLSWADLSFVRPATALTYICSILGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KFWLKEKVSLGRFIGIVFIVIGLIINR HHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ANFILLFLLIITQVLGDIFLSKAMKIFGEVNLVNSESWMPFIIYLLTSFWVWLGVITLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH FCLVLYLTVLSKLDLSYILSIHSLTYLLNALFAWLILDETISNMRFLGTLIITIGVFIVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSKSLYEDRQRYNFNILLMGLSLSFYMSKTWWAIAIIALADSTGDLCLARGMKQVGEVNF HHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCH KSLNGLFEQIGKVIINPLIMLGVLCQAIAFLSFILVLSWADLSFVRPATALTYICSILGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KFWLKEKVSLGRFIGIVFIVIGLIINR HHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA