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The map label for this gene is ycjS [H]

Identifier: 113478307

GI number: 113478307

Start: 7609930

End: 7610943

Strand: Reverse

Name: ycjS [H]

Synonym: Tery_4981

Alternate gene names: 113478307

Gene position: 7610943-7609930 (Counterclockwise)

Preceding gene: 113478309

Following gene: 113478305

Centisome position: 98.2

GC content: 32.84

Gene sequence:

>1014_bases
GTGAAAATAGCTATTGTTGGTTTTGGATTTAGTGCTGAGAAAAGCCACTTACCAGCTTACAAGAATCGTTCTGATATTCA
TCTCACAGCAGTAGTAGATCCTGTAACAGCAAGACGTGCAGCTGCACTGCGACAATACCCAAACATCCGAGTTTATGAGA
AATTTGATGATTTACTAGAAGAAAACTCTGATGAAATAGATATAGTTGATATTTGTTTGCCTAATGCTTTTCATCTCCAA
AGTGCTAAACAAGCATTAGAAGCAGATAAACACGTCTTATGCGAGAAACCATTAGTATTAAAGAAAGATGAATACTCTGA
ATTAGTAAATATAGCAAATAACAGAAAACGTATTTTATATCCATGTCATAATTATAAATTTGCTCCTTCAATAGTACATG
CTGCTTACTTAATTAACTCGGGTAAAATAGGCAAACCTTTATTTGCGTCTTTTAATATATTTGGTGCAGATTTGCAAAGT
GAGGTATCCCAGTACAAACCAGGCTTGGAAGAAAATCAAGAACTATCTGGTGATGGTATTATGATTGACCATGGTTTAGA
TGCAATTTCTGTTGCTCAAACTCTATTTGGAGGTTCTCCTCAACGCATATCTGCACATATTAAAAATCTCAATCAAACAC
ATAATAAATTAGAAGACTTAGCTGTTTTTTGTTTAGATTGGGAGGAAAAATTAATTAACATTAGTGTTAGCTCTTTAGGA
TCAACACCAAAAGCTTATTACAGAATTCAGGGAACAGAAGGAGAAATTAGTATCGAAAATAACGATATATTTTTAAGCGT
GAAAAATCAGCCTGTTCAACAGATTTTTGTACCTACACATTTTGACAATCCTGGTCATGCAAATTGGTTTAATGGATTGA
TTGATAATTTATTAGATTGTATTAAGACTGAAGACACTAAACCATTCCCATTAATCGAAGCTGGTCTAGTTCTTGATATA
ATTGAGAAAGCAAATTATTCTAGTCATAATGAAGGTATTTGGATAACAATATAA

Upstream 100 bases:

>100_bases
AGACCTATAAGCTTAACTAATTATTGAACTAGACTTGACAAAAATTATAACTTTTGTTAAAAAATGTTAAAAACTCATAT
AGTTAAGAGGATCTTAGATT

Downstream 100 bases:

>100_bases
CTTATTATTAAGTCATTACAAAGGATTTAGTGGGTTGGTAACTATTTGCTAGAACTAGGCAAGATAAGACATGAAACTTG
TTTTTTTACAAATTTATTGA

Product: oxidoreductase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MKIAIVGFGFSAEKSHLPAYKNRSDIHLTAVVDPVTARRAAALRQYPNIRVYEKFDDLLEENSDEIDIVDICLPNAFHLQ
SAKQALEADKHVLCEKPLVLKKDEYSELVNIANNRKRILYPCHNYKFAPSIVHAAYLINSGKIGKPLFASFNIFGADLQS
EVSQYKPGLEENQELSGDGIMIDHGLDAISVAQTLFGGSPQRISAHIKNLNQTHNKLEDLAVFCLDWEEKLINISVSSLG
STPKAYYRIQGTEGEISIENNDIFLSVKNQPVQQIFVPTHFDNPGHANWFNGLIDNLLDCIKTEDTKPFPLIEAGLVLDI
IEKANYSSHNEGIWITI

Sequences:

>Translated_337_residues
MKIAIVGFGFSAEKSHLPAYKNRSDIHLTAVVDPVTARRAAALRQYPNIRVYEKFDDLLEENSDEIDIVDICLPNAFHLQ
SAKQALEADKHVLCEKPLVLKKDEYSELVNIANNRKRILYPCHNYKFAPSIVHAAYLINSGKIGKPLFASFNIFGADLQS
EVSQYKPGLEENQELSGDGIMIDHGLDAISVAQTLFGGSPQRISAHIKNLNQTHNKLEDLAVFCLDWEEKLINISVSSLG
STPKAYYRIQGTEGEISIENNDIFLSVKNQPVQQIFVPTHFDNPGHANWFNGLIDNLLDCIKTEDTKPFPLIEAGLVLDI
IEKANYSSHNEGIWITI
>Mature_337_residues
MKIAIVGFGFSAEKSHLPAYKNRSDIHLTAVVDPVTARRAAALRQYPNIRVYEKFDDLLEENSDEIDIVDICLPNAFHLQ
SAKQALEADKHVLCEKPLVLKKDEYSELVNIANNRKRILYPCHNYKFAPSIVHAAYLINSGKIGKPLFASFNIFGADLQS
EVSQYKPGLEENQELSGDGIMIDHGLDAISVAQTLFGGSPQRISAHIKNLNQTHNKLEDLAVFCLDWEEKLINISVSSLG
STPKAYYRIQGTEGEISIENNDIFLSVKNQPVQQIFVPTHFDNPGHANWFNGLIDNLLDCIKTEDTKPFPLIEAGLVLDI
IEKANYSSHNEGIWITI

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI1787574, Length=197, Percent_Identity=27.9187817258883, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789848, Length=212, Percent_Identity=29.7169811320755, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI87081947, Length=257, Percent_Identity=23.3463035019455, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082405, Length=271, Percent_Identity=25.4612546125461, Blast_Score=65, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6323975, Length=316, Percent_Identity=23.7341772151899, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37715; Mature: 37715

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIAIVGFGFSAEKSHLPAYKNRSDIHLTAVVDPVTARRAAALRQYPNIRVYEKFDDLLE
CEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCEEEHHHHHHHH
ENSDEIDIVDICLPNAFHLQSAKQALEADKHVLCEKPLVLKKDEYSELVNIANNRKRILY
CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHCCCCCEEEE
PCHNYKFAPSIVHAAYLINSGKIGKPLFASFNIFGADLQSEVSQYKPGLEENQELSGDGI
ECCCCCCCHHHHHHHHEECCCCCCCCCEEECEEECCCHHHHHHHHCCCCCCCCCCCCCCE
MIDHGLDAISVAQTLFGGSPQRISAHIKNLNQTHNKLEDLAVFCLDWEEKLINISVSSLG
EEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHEEEEEHHHCC
STPKAYYRIQGTEGEISIENNDIFLSVKNQPVQQIFVPTHFDNPGHANWFNGLIDNLLDC
CCCCEEEEEECCCCEEEEECCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH
IKTEDTKPFPLIEAGLVLDIIEKANYSSHNEGIWITI
HHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEC
>Mature Secondary Structure
MKIAIVGFGFSAEKSHLPAYKNRSDIHLTAVVDPVTARRAAALRQYPNIRVYEKFDDLLE
CEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCEEEHHHHHHHH
ENSDEIDIVDICLPNAFHLQSAKQALEADKHVLCEKPLVLKKDEYSELVNIANNRKRILY
CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHCCCCCEEEE
PCHNYKFAPSIVHAAYLINSGKIGKPLFASFNIFGADLQSEVSQYKPGLEENQELSGDGI
ECCCCCCCHHHHHHHHEECCCCCCCCCEEECEEECCCHHHHHHHHCCCCCCCCCCCCCCE
MIDHGLDAISVAQTLFGGSPQRISAHIKNLNQTHNKLEDLAVFCLDWEEKLINISVSSLG
EEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHEEEEEHHHCC
STPKAYYRIQGTEGEISIENNDIFLSVKNQPVQQIFVPTHFDNPGHANWFNGLIDNLLDC
CCCCEEEEEECCCCEEEEECCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH
IKTEDTKPFPLIEAGLVLDIIEKANYSSHNEGIWITI
HHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]