| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478304
Identifier: 113478304
GI number: 113478304
Start: 7602384
End: 7603871
Strand: Reverse
Name: 113478304
Synonym: Tery_4978
Alternate gene names: NA
Gene position: 7603871-7602384 (Counterclockwise)
Preceding gene: 113478305
Following gene: 113478303
Centisome position: 98.11
GC content: 33.87
Gene sequence:
>1488_bases TTGATACCAAAAACCTTTAGATACTGGATTATATCTTTGCTATTAAGCTTAATTATCTGCCTAGGTATATCAAGTCCTAG CTACGCCTATAGTCAATCTATTACTACCAAAACAATCCATGTTTTAAATCGTCTGACTTTGGGCCCTAGGCCAGGAGATA TAGAACGAGTTGAGTCTATAGGAATTGATAATTATATTAAATCTCAACTGAGACCAGAAACTATTAGAGAATCTCCTCAA CTTACACAAAAAATGGCTAAGTTAACCAATTTCTACTTATCACCAACAGAATTATATCAAAAAACTGTCTCTCCAGTTAA AAAAAGAGATAAAAATTTGACTCAAAAACAACGAATAGAAATAAGAAATAAAAATATCAGAAAAATTTTACGGGAATCAG AAAATGCACGTTTACTTCAAGGAATATTGAGCAACAAACAACTACAAGAAGTAATGGTAGATTTTTGGTTTAACCACTTC AATATTTCTGTAGGTAAAGGTTACTTAACTCGCCTCTGGGTAGGGACTTACGAAAGAGACGCTATTCGACCTTATGCACT TGGTAATTTTCGTAATTTATTAGGAGCAACAGCCCATCATCCAGCAATGCTATTTTATTTAGATAATTGGCTAAATACTG CCCCTGGTAGTAAAGGTGCCCGTGGCAAATTTAAAGGCTTAAATGAAAACTATGCCCGTGAGCTTATGGAGCTTCATAGT ATGGGAATTAATGGAGGTTATACACAACAAGAGATAATAACTTTAGCAAGAATTTTTACAGGTTGGGGAATAAAGTACCT TAGTGAAGATGGTAGTGGGTTTAAGTTTTATCAAAATCGCCATGATAATAGTGACAAAATATTCCTAGGAGTACCCATTA AAGGTGGTGGAGTAGAAGAGGGAGAAAAGGCTTTAGATATTTTAGCAAAACATCCATCTACTGCCCATTTTATTAGTTAT AAATTAGCTCAATATTTTGTTGCCGATGTACCTCCCAGTAGCTTAGTTAATAAACTAGATCAAAGATTTCAAGAAACTAA TGGCAATATTCGTTATGTATTAGAAACCTTATTTAATAGTTCTGAGTTTTGGAATGAAAAATATTATGATAGTAAGTTTA AAAACCCTTATCAATATATTATTTCTGCTGCTAGATCAACGGGTACCGAAAACCCAAGATTCGGCAGAATTAAAAGAATT TTAGGTCAATTAGGAATGAACCTTTATGGCTGTAAGACTCCTGACGGCTATAAAAACACTCAAGAAGCATGGTTAAATCC TGATGCTATAATGCGTCGGATTAGTTTTGCTACAATTATATCCCGTGGTCAGTTGAATCAAGGAAAGCCTAAACTGGTAA ATTATCAGCAACTTAGGGCAACTTTAGGAAATAGATTTTCTACCCAAACTCAAGCCGTTATTAACAATAGTCCAGATAAT TTACAGGCAGCATTAATTTTAGGTAGTCCAGAAATGATGAAAAAATAA
Upstream 100 bases:
>100_bases GTTGACTAAAAGCAAAAAAAATTAGAATTAAAACTGCTATAAAATATATAAAAGTTAAATAATACAAGTCAAAAAAATTA GAGTATTTCAGGAGGAATAG
Downstream 100 bases:
>100_bases ATTAAAAGTTATGGTCAATTTTTCTACTGATTAATCTGTCATTTTAGTTATCAGTTATTAGTTATCAATACCTATGACTG AAGATATAGCTTGAAATAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 495; Mature: 495
Protein sequence:
>495_residues MIPKTFRYWIISLLLSLIICLGISSPSYAYSQSITTKTIHVLNRLTLGPRPGDIERVESIGIDNYIKSQLRPETIRESPQ LTQKMAKLTNFYLSPTELYQKTVSPVKKRDKNLTQKQRIEIRNKNIRKILRESENARLLQGILSNKQLQEVMVDFWFNHF NISVGKGYLTRLWVGTYERDAIRPYALGNFRNLLGATAHHPAMLFYLDNWLNTAPGSKGARGKFKGLNENYARELMELHS MGINGGYTQQEIITLARIFTGWGIKYLSEDGSGFKFYQNRHDNSDKIFLGVPIKGGGVEEGEKALDILAKHPSTAHFISY KLAQYFVADVPPSSLVNKLDQRFQETNGNIRYVLETLFNSSEFWNEKYYDSKFKNPYQYIISAARSTGTENPRFGRIKRI LGQLGMNLYGCKTPDGYKNTQEAWLNPDAIMRRISFATIISRGQLNQGKPKLVNYQQLRATLGNRFSTQTQAVINNSPDN LQAALILGSPEMMKK
Sequences:
>Translated_495_residues MIPKTFRYWIISLLLSLIICLGISSPSYAYSQSITTKTIHVLNRLTLGPRPGDIERVESIGIDNYIKSQLRPETIRESPQ LTQKMAKLTNFYLSPTELYQKTVSPVKKRDKNLTQKQRIEIRNKNIRKILRESENARLLQGILSNKQLQEVMVDFWFNHF NISVGKGYLTRLWVGTYERDAIRPYALGNFRNLLGATAHHPAMLFYLDNWLNTAPGSKGARGKFKGLNENYARELMELHS MGINGGYTQQEIITLARIFTGWGIKYLSEDGSGFKFYQNRHDNSDKIFLGVPIKGGGVEEGEKALDILAKHPSTAHFISY KLAQYFVADVPPSSLVNKLDQRFQETNGNIRYVLETLFNSSEFWNEKYYDSKFKNPYQYIISAARSTGTENPRFGRIKRI LGQLGMNLYGCKTPDGYKNTQEAWLNPDAIMRRISFATIISRGQLNQGKPKLVNYQQLRATLGNRFSTQTQAVINNSPDN LQAALILGSPEMMKK >Mature_495_residues MIPKTFRYWIISLLLSLIICLGISSPSYAYSQSITTKTIHVLNRLTLGPRPGDIERVESIGIDNYIKSQLRPETIRESPQ LTQKMAKLTNFYLSPTELYQKTVSPVKKRDKNLTQKQRIEIRNKNIRKILRESENARLLQGILSNKQLQEVMVDFWFNHF NISVGKGYLTRLWVGTYERDAIRPYALGNFRNLLGATAHHPAMLFYLDNWLNTAPGSKGARGKFKGLNENYARELMELHS MGINGGYTQQEIITLARIFTGWGIKYLSEDGSGFKFYQNRHDNSDKIFLGVPIKGGGVEEGEKALDILAKHPSTAHFISY KLAQYFVADVPPSSLVNKLDQRFQETNGNIRYVLETLFNSSEFWNEKYYDSKFKNPYQYIISAARSTGTENPRFGRIKRI LGQLGMNLYGCKTPDGYKNTQEAWLNPDAIMRRISFATIISRGQLNQGKPKLVNYQQLRATLGNRFSTQTQAVINNSPDN LQAALILGSPEMMKK
Specific function: Unknown
COG id: COG5267
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56539; Mature: 56539
Theoretical pI: Translated: 10.25; Mature: 10.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPKTFRYWIISLLLSLIICLGISSPSYAYSQSITTKTIHVLNRLTLGPRPGDIERVESI CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHC GIDNYIKSQLRPETIRESPQLTQKMAKLTNFYLSPTELYQKTVSPVKKRDKNLTQKQRIE CHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH IRNKNIRKILRESENARLLQGILSNKQLQEVMVDFWFNHFNISVGKGYLTRLWVGTYERD HHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCHHHHHEECCCCCC AIRPYALGNFRNLLGATAHHPAMLFYLDNWLNTAPGSKGARGKFKGLNENYARELMELHS CCCCHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH MGINGGYTQQEIITLARIFTGWGIKYLSEDGSGFKFYQNRHDNSDKIFLGVPIKGGGVEE CCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHCCCCCCCEEEEEEECCCCCCCC GEKALDILAKHPSTAHFISYKLAQYFVADVPPSSLVNKLDQRFQETNGNIRYVLETLFNS HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCC SEFWNEKYYDSKFKNPYQYIISAARSTGTENPRFGRIKRILGQLGMNLYGCKTPDGYKNT HHHHCHHHCCHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCC QEAWLNPDAIMRRISFATIISRGQLNQGKPKLVNYQQLRATLGNRFSTQTQAVINNSPDN HHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCC LQAALILGSPEMMKK EEEEEEECCHHHHCC >Mature Secondary Structure MIPKTFRYWIISLLLSLIICLGISSPSYAYSQSITTKTIHVLNRLTLGPRPGDIERVESI CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHC GIDNYIKSQLRPETIRESPQLTQKMAKLTNFYLSPTELYQKTVSPVKKRDKNLTQKQRIE CHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH IRNKNIRKILRESENARLLQGILSNKQLQEVMVDFWFNHFNISVGKGYLTRLWVGTYERD HHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCHHHHHEECCCCCC AIRPYALGNFRNLLGATAHHPAMLFYLDNWLNTAPGSKGARGKFKGLNENYARELMELHS CCCCHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH MGINGGYTQQEIITLARIFTGWGIKYLSEDGSGFKFYQNRHDNSDKIFLGVPIKGGGVEE CCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHCCCCCCCEEEEEEECCCCCCCC GEKALDILAKHPSTAHFISYKLAQYFVADVPPSSLVNKLDQRFQETNGNIRYVLETLFNS HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCC SEFWNEKYYDSKFKNPYQYIISAARSTGTENPRFGRIKRILGQLGMNLYGCKTPDGYKNT HHHHCHHHCCHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCC QEAWLNPDAIMRRISFATIISRGQLNQGKPKLVNYQQLRATLGNRFSTQTQAVINNSPDN HHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCC LQAALILGSPEMMKK EEEEEEECCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA