| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478270
Identifier: 113478270
GI number: 113478270
Start: 7533289
End: 7534653
Strand: Reverse
Name: 113478270
Synonym: Tery_4944
Alternate gene names: NA
Gene position: 7534653-7533289 (Counterclockwise)
Preceding gene: 113478271
Following gene: 113478269
Centisome position: 97.22
GC content: 28.79
Gene sequence:
>1365_bases ATGACTATACTCAAAATACCTATATTTGCTCCCGATAGTAAATTTATTAGACTATGGGAAATATTAATTGTATTTATTAC TGTTTATAATGCTTTTCTGATACCATTTAGAATTTCTTTTGAAAAAAGATTTTATGGCATCTGGATTTTATTAGATCTAA TCGGAGACGTTATTCTAATCGCGGATATATTTCTTCGTTTCCATTTAGGTTACTTTGAGCATGGAGAATATGTTGAAGAT AAAAAAAAGATAGCTCAACGTTACTTTTATAAACTTTTAAGAAGACATTTAATAGCTAGTTTTCCTGGAGATTTAATTGC ACGAATTTTGCTACCAAATTCACTATTTATTATTGGGTTGTGTAGATGCCCTCGTTTATTACGCTTACCTCAGTTTTATC GAATTTTTAATAGATGGGAAACTAATATTAATATTGAGCCTACCTTAATTAGAATGTGTAAGTTAATAATATTTATTGCT TTAATTACTCATTGGGTAGCTTGTGGATGGTTTCTAATTGGTAGTTGGGAAAGTAATTTTGGAGAGTCTTGGTTAATTAA TAAGTCCTTAAAATCAGTTGGTACAAGAACCCAATATATTAACTGTCTTTATTGGGCAATTACTACTTTAACTACTGTTG GGTATGGAGATATTACACCCACTACAGAAATCGAAATAATATTCACATTAATGGTAATGTTTTTAGGGATATCTATGTAT GCTTATACTATTGGTAATGTATCTTCATTAATTTCTAACTTAGATGCAGCTCAAGCCAGATATAGAGAAAAGTTACACCA AATTAAAACCTATATGCGGGAAAACAAAATATCTCCGAAATTACAAAAAAAAATTAGAGACTACTATCAATATAAATGGA TTGAAAATCGGGATATTAGAGATTATTATATAGTTGAAGAATTACCTCATCCTCTGAAAACTAAACTAGCACTGCAATTG CATAAAGAGGTAATTGAAAAAGTGCCTATTTTTCAAGGCTCAACTTCACATTTTGTAGAAGAAATAGTAATAGCATTAAA ACCAGAAATAGTACCACCTAATGAATATATAATTCGTGAAGGTAATTTGGGAAATGAAATGTATTTTATTAAGCGTGGGT TAGTACAAGTTTTCTCAGAAAAAACTGGTTCTATATATAGAACTATGGAGGCAGGTACATTTTTTGGAGAAATTTCTCTA GTATATGAAAAACGACGTACTGCATCAATTATCACATTAACTTACTGTGAATTATTTATTTTATACAAAAATGATTTTAA AAAAGTATTAGAACATTATCCAGATTTTGCAGCTCATGTTAAAAAAATAGCTAAAGAACGTTATAAACTTGAAAATAAAG AATAA
Upstream 100 bases:
>100_bases AAAAATTTTAAGATATTAGTATAACTTTTAACTTTTGAGTTTTGACTTCTATAAAATAGTTAAAAATTATTAATACTTCC TTGTCAGAAAACTTTGACTA
Downstream 100 bases:
>100_bases CTATGCAACCATCAAAAAAAAGAACAATTAAGTATATTAAACAACCTACTTCTCAAATTTGGATAGACCAAGCGATCGCT AATTTAGATATTATATTATT
Product: cyclic nucleotide-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 454; Mature: 453
Protein sequence:
>454_residues MTILKIPIFAPDSKFIRLWEILIVFITVYNAFLIPFRISFEKRFYGIWILLDLIGDVILIADIFLRFHLGYFEHGEYVED KKKIAQRYFYKLLRRHLIASFPGDLIARILLPNSLFIIGLCRCPRLLRLPQFYRIFNRWETNINIEPTLIRMCKLIIFIA LITHWVACGWFLIGSWESNFGESWLINKSLKSVGTRTQYINCLYWAITTLTTVGYGDITPTTEIEIIFTLMVMFLGISMY AYTIGNVSSLISNLDAAQARYREKLHQIKTYMRENKISPKLQKKIRDYYQYKWIENRDIRDYYIVEELPHPLKTKLALQL HKEVIEKVPIFQGSTSHFVEEIVIALKPEIVPPNEYIIREGNLGNEMYFIKRGLVQVFSEKTGSIYRTMEAGTFFGEISL VYEKRRTASIITLTYCELFILYKNDFKKVLEHYPDFAAHVKKIAKERYKLENKE
Sequences:
>Translated_454_residues MTILKIPIFAPDSKFIRLWEILIVFITVYNAFLIPFRISFEKRFYGIWILLDLIGDVILIADIFLRFHLGYFEHGEYVED KKKIAQRYFYKLLRRHLIASFPGDLIARILLPNSLFIIGLCRCPRLLRLPQFYRIFNRWETNINIEPTLIRMCKLIIFIA LITHWVACGWFLIGSWESNFGESWLINKSLKSVGTRTQYINCLYWAITTLTTVGYGDITPTTEIEIIFTLMVMFLGISMY AYTIGNVSSLISNLDAAQARYREKLHQIKTYMRENKISPKLQKKIRDYYQYKWIENRDIRDYYIVEELPHPLKTKLALQL HKEVIEKVPIFQGSTSHFVEEIVIALKPEIVPPNEYIIREGNLGNEMYFIKRGLVQVFSEKTGSIYRTMEAGTFFGEISL VYEKRRTASIITLTYCELFILYKNDFKKVLEHYPDFAAHVKKIAKERYKLENKE >Mature_453_residues TILKIPIFAPDSKFIRLWEILIVFITVYNAFLIPFRISFEKRFYGIWILLDLIGDVILIADIFLRFHLGYFEHGEYVEDK KKIAQRYFYKLLRRHLIASFPGDLIARILLPNSLFIIGLCRCPRLLRLPQFYRIFNRWETNINIEPTLIRMCKLIIFIAL ITHWVACGWFLIGSWESNFGESWLINKSLKSVGTRTQYINCLYWAITTLTTVGYGDITPTTEIEIIFTLMVMFLGISMYA YTIGNVSSLISNLDAAQARYREKLHQIKTYMRENKISPKLQKKIRDYYQYKWIENRDIRDYYIVEELPHPLKTKLALQLH KEVIEKVPIFQGSTSHFVEEIVIALKPEIVPPNEYIIREGNLGNEMYFIKRGLVQVFSEKTGSIYRTMEAGTFFGEISLV YEKRRTASIITLTYCELFILYKNDFKKVLEHYPDFAAHVKKIAKERYKLENKE
Specific function: Cyclic nucleotide-regulated potassium channel activated by cAMP [H]
COG id: COG0664
COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cyclic nucleotide-binding domain [H]
Homologues:
Organism=Homo sapiens, GI42718011, Length=453, Percent_Identity=33.112582781457, Blast_Score=250, Evalue=2e-66, Organism=Homo sapiens, GI82617546, Length=453, Percent_Identity=29.8013245033113, Blast_Score=229, Evalue=4e-60, Organism=Homo sapiens, GI120433600, Length=456, Percent_Identity=29.1666666666667, Blast_Score=229, Evalue=4e-60, Organism=Homo sapiens, GI4502917, Length=456, Percent_Identity=29.1666666666667, Blast_Score=228, Evalue=6e-60, Organism=Homo sapiens, GI71143141, Length=441, Percent_Identity=29.4784580498866, Blast_Score=226, Evalue=3e-59, Organism=Homo sapiens, GI217035093, Length=441, Percent_Identity=29.4784580498866, Blast_Score=226, Evalue=3e-59, Organism=Homo sapiens, GI13540549, Length=456, Percent_Identity=28.7280701754386, Blast_Score=206, Evalue=5e-53, Organism=Homo sapiens, GI27886653, Length=458, Percent_Identity=28.82096069869, Blast_Score=205, Evalue=7e-53, Organism=Homo sapiens, GI26051273, Length=457, Percent_Identity=28.0087527352298, Blast_Score=204, Evalue=1e-52, Organism=Homo sapiens, GI4557729, Length=457, Percent_Identity=28.0087527352298, Blast_Score=203, Evalue=3e-52, Organism=Homo sapiens, GI156071470, Length=462, Percent_Identity=27.9220779220779, Blast_Score=199, Evalue=4e-51, Organism=Homo sapiens, GI4885407, Length=462, Percent_Identity=27.4891774891775, Blast_Score=198, Evalue=1e-50, Organism=Homo sapiens, GI116325989, Length=462, Percent_Identity=27.0562770562771, Blast_Score=196, Evalue=4e-50, Organism=Homo sapiens, GI38327037, Length=462, Percent_Identity=26.1904761904762, Blast_Score=189, Evalue=3e-48, Organism=Homo sapiens, GI26051271, Length=429, Percent_Identity=27.5058275058275, Blast_Score=180, Evalue=3e-45, Organism=Homo sapiens, GI27886651, Length=441, Percent_Identity=26.7573696145125, Blast_Score=179, Evalue=5e-45, Organism=Homo sapiens, GI4504831, Length=456, Percent_Identity=26.3157894736842, Blast_Score=177, Evalue=1e-44, Organism=Homo sapiens, GI114205399, Length=447, Percent_Identity=28.1879194630872, Blast_Score=176, Evalue=4e-44, Organism=Homo sapiens, GI27886648, Length=458, Percent_Identity=26.4192139737991, Blast_Score=176, Evalue=5e-44, Organism=Homo sapiens, GI22024390, Length=458, Percent_Identity=26.2008733624454, Blast_Score=173, Evalue=4e-43, Organism=Homo sapiens, GI116642889, Length=416, Percent_Identity=27.8846153846154, Blast_Score=171, Evalue=1e-42, Organism=Homo sapiens, GI27437001, Length=483, Percent_Identity=25.2587991718427, Blast_Score=170, Evalue=3e-42, Organism=Homo sapiens, GI38569493, Length=477, Percent_Identity=27.2536687631027, Blast_Score=159, Evalue=7e-39, Organism=Homo sapiens, GI27886646, Length=397, Percent_Identity=25.6926952141058, Blast_Score=157, Evalue=3e-38, Organism=Homo sapiens, GI27886667, Length=450, Percent_Identity=23.3333333333333, Blast_Score=149, Evalue=4e-36, Organism=Homo sapiens, GI6912446, Length=458, Percent_Identity=24.235807860262, Blast_Score=147, Evalue=2e-35, Organism=Homo sapiens, GI27886665, Length=310, Percent_Identity=31.6129032258064, Blast_Score=144, Evalue=1e-34, Organism=Caenorhabditis elegans, GI17556791, Length=424, Percent_Identity=30.188679245283, Blast_Score=211, Evalue=5e-55, Organism=Caenorhabditis elegans, GI193205559, Length=460, Percent_Identity=28.4782608695652, Blast_Score=202, Evalue=2e-52, Organism=Caenorhabditis elegans, GI193205557, Length=460, Percent_Identity=28.4782608695652, Blast_Score=202, Evalue=2e-52, Organism=Caenorhabditis elegans, GI17555416, Length=460, Percent_Identity=28.4782608695652, Blast_Score=202, Evalue=3e-52, Organism=Caenorhabditis elegans, GI193205554, Length=460, Percent_Identity=28.4782608695652, Blast_Score=202, Evalue=3e-52, Organism=Caenorhabditis elegans, GI193205550, Length=460, Percent_Identity=28.4782608695652, Blast_Score=202, Evalue=4e-52, Organism=Caenorhabditis elegans, GI193205548, Length=460, Percent_Identity=28.4782608695652, Blast_Score=202, Evalue=4e-52, Organism=Caenorhabditis elegans, GI193205546, Length=460, Percent_Identity=28.4782608695652, Blast_Score=201, Evalue=5e-52, Organism=Caenorhabditis elegans, GI193205552, Length=460, Percent_Identity=28.4782608695652, Blast_Score=201, Evalue=6e-52, Organism=Caenorhabditis elegans, GI71985735, Length=467, Percent_Identity=26.338329764454, Blast_Score=175, Evalue=4e-44, Organism=Caenorhabditis elegans, GI71989969, Length=491, Percent_Identity=24.0325865580448, Blast_Score=144, Evalue=1e-34, Organism=Caenorhabditis elegans, GI17538726, Length=501, Percent_Identity=22.3552894211577, Blast_Score=143, Evalue=2e-34, Organism=Caenorhabditis elegans, GI17559702, Length=244, Percent_Identity=29.5081967213115, Blast_Score=129, Evalue=4e-30, Organism=Caenorhabditis elegans, GI193207729, Length=244, Percent_Identity=29.5081967213115, Blast_Score=129, Evalue=4e-30, Organism=Caenorhabditis elegans, GI17544220, Length=283, Percent_Identity=24.3816254416961, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI71988286, Length=269, Percent_Identity=22.6765799256506, Blast_Score=100, Evalue=3e-21, Organism=Caenorhabditis elegans, GI25144999, Length=112, Percent_Identity=35.7142857142857, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI25145007, Length=112, Percent_Identity=35.7142857142857, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI45549131, Length=458, Percent_Identity=31.2227074235808, Blast_Score=229, Evalue=2e-60, Organism=Drosophila melanogaster, GI45551460, Length=458, Percent_Identity=31.2227074235808, Blast_Score=229, Evalue=2e-60, Organism=Drosophila melanogaster, GI221330552, Length=449, Percent_Identity=29.3986636971047, Blast_Score=226, Evalue=2e-59, Organism=Drosophila melanogaster, GI221330550, Length=451, Percent_Identity=29.490022172949, Blast_Score=224, Evalue=9e-59, Organism=Drosophila melanogaster, GI17137122, Length=435, Percent_Identity=30.1149425287356, Blast_Score=223, Evalue=2e-58, Organism=Drosophila melanogaster, GI85725018, Length=461, Percent_Identity=28.6334056399132, Blast_Score=211, Evalue=9e-55, Organism=Drosophila melanogaster, GI221330263, Length=461, Percent_Identity=28.6334056399132, Blast_Score=211, Evalue=1e-54, Organism=Drosophila melanogaster, GI85725022, Length=461, Percent_Identity=28.6334056399132, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI221330257, Length=466, Percent_Identity=28.3261802575107, Blast_Score=202, Evalue=4e-52, Organism=Drosophila melanogaster, GI221330259, Length=493, Percent_Identity=26.9776876267748, Blast_Score=192, Evalue=3e-49, Organism=Drosophila melanogaster, GI85725024, Length=498, Percent_Identity=26.7068273092369, Blast_Score=190, Evalue=2e-48, Organism=Drosophila melanogaster, GI24762524, Length=454, Percent_Identity=26.431718061674, Blast_Score=186, Evalue=3e-47, Organism=Drosophila melanogaster, GI17136454, Length=454, Percent_Identity=26.431718061674, Blast_Score=186, Evalue=3e-47, Organism=Drosophila melanogaster, GI45550482, Length=449, Percent_Identity=27.1714922048998, Blast_Score=178, Evalue=8e-45, Organism=Drosophila melanogaster, GI17136946, Length=454, Percent_Identity=27.3127753303965, Blast_Score=166, Evalue=3e-41, Organism=Drosophila melanogaster, GI24642070, Length=455, Percent_Identity=24.3956043956044, Blast_Score=153, Evalue=2e-37, Organism=Drosophila melanogaster, GI116007160, Length=455, Percent_Identity=24.3956043956044, Blast_Score=152, Evalue=4e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018490 - InterPro: IPR018488 - InterPro: IPR000595 - InterPro: IPR013099 - InterPro: IPR003091 - InterPro: IPR014710 [H]
Pfam domain/function: PF00027 cNMP_binding; PF07885 Ion_trans_2 [H]
EC number: NA
Molecular weight: Translated: 53690; Mature: 53559
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: PS00888 CNMP_BINDING_1 ; PS00889 CNMP_BINDING_2 ; PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTILKIPIFAPDSKFIRLWEILIVFITVYNAFLIPFRISFEKRFYGIWILLDLIGDVILI CEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHH ADIFLRFHLGYFEHGEYVEDKKKIAQRYFYKLLRRHLIASFPGDLIARILLPNSLFIIGL HHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEHHH CRCPRLLRLPQFYRIFNRWETNINIEPTLIRMCKLIIFIALITHWVACGWFLIGSWESNF HHCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC GESWLINKSLKSVGTRTQYINCLYWAITTLTTVGYGDITPTTEIEIIFTLMVMFLGISMY CCCCEEHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH AYTIGNVSSLISNLDAAQARYREKLHQIKTYMRENKISPKLQKKIRDYYQYKWIENRDIR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC DYYIVEELPHPLKTKLALQLHKEVIEKVPIFQGSTSHFVEEIVIALKPEIVPPNEYIIRE HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEC GNLGNEMYFIKRGLVQVFSEKTGSIYRTMEAGTFFGEISLVYEKRRTASIITLTYCELFI CCCCCHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHCCCHHHEEHHHHHHHH LYKNDFKKVLEHYPDFAAHVKKIAKERYKLENKE HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TILKIPIFAPDSKFIRLWEILIVFITVYNAFLIPFRISFEKRFYGIWILLDLIGDVILI EEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHH ADIFLRFHLGYFEHGEYVEDKKKIAQRYFYKLLRRHLIASFPGDLIARILLPNSLFIIGL HHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEHHH CRCPRLLRLPQFYRIFNRWETNINIEPTLIRMCKLIIFIALITHWVACGWFLIGSWESNF HHCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC GESWLINKSLKSVGTRTQYINCLYWAITTLTTVGYGDITPTTEIEIIFTLMVMFLGISMY CCCCEEHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH AYTIGNVSSLISNLDAAQARYREKLHQIKTYMRENKISPKLQKKIRDYYQYKWIENRDIR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC DYYIVEELPHPLKTKLALQLHKEVIEKVPIFQGSTSHFVEEIVIALKPEIVPPNEYIIRE HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEC GNLGNEMYFIKRGLVQVFSEKTGSIYRTMEAGTFFGEISLVYEKRRTASIITLTYCELFI CCCCCHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHCCCHHHEEHHHHHHHH LYKNDFKKVLEHYPDFAAHVKKIAKERYKLENKE HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA