| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is aroA [H]
Identifier: 113478232
GI number: 113478232
Start: 7475785
End: 7477173
Strand: Reverse
Name: aroA [H]
Synonym: Tery_4895
Alternate gene names: 113478232
Gene position: 7477173-7475785 (Counterclockwise)
Preceding gene: 113478233
Following gene: 113478229
Centisome position: 96.48
GC content: 40.24
Gene sequence:
>1389_bases ATGGCTGTGGCGTTAGTAAAGGTTGATTTTATGGTAGCTACTGTAGTTAGTACAAAAATTACAAATAGTCAGGAAACTTT GATAATTCAAAACCCAAAGTTAGGTTTATCTCTTTGCGGTAATATTTCAATTCCTGGAGATAAATCAATTTCTCATCGCG CTTTGATGTTAGGAGCAATAGCTCAAGGCCAAACTAATATTCAAGGTTTACTCTTAGGAGCTGATCCCTACAGTACTGCT GGATGTTTTTCACTTCTTGGGGCGAATATTTCCCAACTTAATTCGGAGTTTGTACAAGTTGATGGAGTGGGTCTTTTAAA TCTTACAGAACCATCTTGCGTTTTGGACTGTGGTAATTCAGGCACTACAATGCGACTAATGTTGGGAATTTTAGCATCCC ATCCTGAACATTTCTTTACTGTGACAGGGGATAGCTCCTTAGTACAACGTCCAATGTCTCGTGTTATTCAGCCACTCACA GAAATGGGGGCTCAAATCTGGGGTAGAAAAGGAAACAGCTTGGCACCTTTAGCAATTCAGGGACAAAAGTTACGACCAAT TCATTATTATTCTCCCATTGCTTCAGCTCAGGTGAAATCTTGTATTTTGTTAGCTGGTTTAATGGCAGAAGGGAAAACTA CGATAACTGAACCTGCTCTTTCACGAGACCATAGTGAAAGAATGTTAAAAGCTTTTGGAGCAGAAATTCAAGTGGACCCA GAAACAAATAGTGTGACGGTAACAGGTCCGGCTCAACTTAAAGGCCAAGATGTAGTTGTGCCTGGTGATATTAGCTCCGC AGCTTTTTGGTTAGTAGCAGCAGCTATTGTACCTGGCTCAGAATTAGTAATTGAAAATGTTGGTGTTAATTCTACCCGTA CAGGTATTTTGGAAGTATTAGAAAGAATGGAAGTAGATATTAGACAGGAAAATCACCGAGTTGTAGCAGGAGAACCTGTA GCAGATTTACGGGTATGTTACAGTTCATTAAAAGCTTGCGAAATTTCTGGTTCTATTATTCCCAGATTAATTGATGAAAT TCCAATTTTGGCCGTAGCTGCTATGTTTGCTGAAGGGACAACAGTGATTCGGGATGCTGCTGAGTTGCGGGTCAAAGAAA GCGATCGCCTAGCAGTTATGGCCACCCAGCTCCAAAAACTGGGGGCTAAAATTATAGAACTACCAGATGGTTTGGAAATT ACTGGTGGTGTTTCTATAACTGGTACAGATGTTGAGAGCAATGGGGATCATCGAGTAGCAATGAGTTTAGCGATCGCTGC ATTGAATGCTACTGGCATTACTAATATCCATCATGCTGAAACTGTCAATATCTCTTATCCCAGCTTTGTTCAAACTCTAC AACAAGTCTGTACTTCAAACATAAATTAG
Upstream 100 bases:
>100_bases AATACTTAAAGCACAAATAATAGACTAATTTAGTTTGATATTAATGAATTATTGATGCTCTGTAATCTCATCGCCATGCT TTTCACCATCTTATAATATT
Downstream 100 bases:
>100_bases GTTAAAAATTACCCAAGTTTTAGGCATCGGCTAAATTATGAAAAATTAACCAATGCCTAAGTTTTAAAGTCCTTTCAAGT ATGATTAACTATCAGATGGC
Product: 3-phosphoshikimate 1-carboxyvinyltransferase
Products: NA
Alternate protein names: 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS [H]
Number of amino acids: Translated: 462; Mature: 461
Protein sequence:
>462_residues MAVALVKVDFMVATVVSTKITNSQETLIIQNPKLGLSLCGNISIPGDKSISHRALMLGAIAQGQTNIQGLLLGADPYSTA GCFSLLGANISQLNSEFVQVDGVGLLNLTEPSCVLDCGNSGTTMRLMLGILASHPEHFFTVTGDSSLVQRPMSRVIQPLT EMGAQIWGRKGNSLAPLAIQGQKLRPIHYYSPIASAQVKSCILLAGLMAEGKTTITEPALSRDHSERMLKAFGAEIQVDP ETNSVTVTGPAQLKGQDVVVPGDISSAAFWLVAAAIVPGSELVIENVGVNSTRTGILEVLERMEVDIRQENHRVVAGEPV ADLRVCYSSLKACEISGSIIPRLIDEIPILAVAAMFAEGTTVIRDAAELRVKESDRLAVMATQLQKLGAKIIELPDGLEI TGGVSITGTDVESNGDHRVAMSLAIAALNATGITNIHHAETVNISYPSFVQTLQQVCTSNIN
Sequences:
>Translated_462_residues MAVALVKVDFMVATVVSTKITNSQETLIIQNPKLGLSLCGNISIPGDKSISHRALMLGAIAQGQTNIQGLLLGADPYSTA GCFSLLGANISQLNSEFVQVDGVGLLNLTEPSCVLDCGNSGTTMRLMLGILASHPEHFFTVTGDSSLVQRPMSRVIQPLT EMGAQIWGRKGNSLAPLAIQGQKLRPIHYYSPIASAQVKSCILLAGLMAEGKTTITEPALSRDHSERMLKAFGAEIQVDP ETNSVTVTGPAQLKGQDVVVPGDISSAAFWLVAAAIVPGSELVIENVGVNSTRTGILEVLERMEVDIRQENHRVVAGEPV ADLRVCYSSLKACEISGSIIPRLIDEIPILAVAAMFAEGTTVIRDAAELRVKESDRLAVMATQLQKLGAKIIELPDGLEI TGGVSITGTDVESNGDHRVAMSLAIAALNATGITNIHHAETVNISYPSFVQTLQQVCTSNIN >Mature_461_residues AVALVKVDFMVATVVSTKITNSQETLIIQNPKLGLSLCGNISIPGDKSISHRALMLGAIAQGQTNIQGLLLGADPYSTAG CFSLLGANISQLNSEFVQVDGVGLLNLTEPSCVLDCGNSGTTMRLMLGILASHPEHFFTVTGDSSLVQRPMSRVIQPLTE MGAQIWGRKGNSLAPLAIQGQKLRPIHYYSPIASAQVKSCILLAGLMAEGKTTITEPALSRDHSERMLKAFGAEIQVDPE TNSVTVTGPAQLKGQDVVVPGDISSAAFWLVAAAIVPGSELVIENVGVNSTRTGILEVLERMEVDIRQENHRVVAGEPVA DLRVCYSSLKACEISGSIIPRLIDEIPILAVAAMFAEGTTVIRDAAELRVKESDRLAVMATQLQKLGAKIIELPDGLEIT GGVSITGTDVESNGDHRVAMSLAIAALNATGITNIHHAETVNISYPSFVQTLQQVCTSNIN
Specific function: Aromatic amino acids biosynthesis; shikimate pathway; sixth step. [C]
COG id: COG0128
COG function: function code E; 5-enolpyruvylshikimate-3-phosphate synthase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the EPSP synthase family [H]
Homologues:
Organism=Escherichia coli, GI1787137, Length=427, Percent_Identity=28.8056206088993, Blast_Score=129, Evalue=3e-31, Organism=Saccharomyces cerevisiae, GI6320332, Length=453, Percent_Identity=28.9183222958057, Blast_Score=121, Evalue=2e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001986 - InterPro: IPR006264 - InterPro: IPR023193 - InterPro: IPR013792 [H]
Pfam domain/function: PF00275 EPSP_synthase [H]
EC number: =2.5.1.19 [H]
Molecular weight: Translated: 48908; Mature: 48777
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: PS00104 EPSP_SYNTHASE_1 ; PS00885 EPSP_SYNTHASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVALVKVDFMVATVVSTKITNSQETLIIQNPKLGLSLCGNISIPGDKSISHRALMLGAI CEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCHHHHEEEHH AQGQTNIQGLLLGADPYSTAGCFSLLGANISQLNSEFVQVDGVGLLNLTEPSCVLDCGNS HCCCCCCEEEEEECCCCCHHHHHHHHCCCHHHHCCCEEEECCEEEEEECCCCEEEECCCC GTTMRLMLGILASHPEHFFTVTGDSSLVQRPMSRVIQPLTEMGAQIWGRKGNSLAPLAIQ CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEC GQKLRPIHYYSPIASAQVKSCILLAGLMAEGKTTITEPALSRDHSERMLKAFGAEIQVDP CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEECCCHHCCHHHHHHHHHCCCEEEECC ETNSVTVTGPAQLKGQDVVVPGDISSAAFWLVAAAIVPGSELVIENVGVNSTRTGILEVL CCCEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH ERMEVDIRQENHRVVAGEPVADLRVCYSSLKACEISGSIIPRLIDEIPILAVAAMFAEGT HHHCCCEECCCCEEEECCCHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCC TVIRDAAELRVKESDRLAVMATQLQKLGAKIIELPDGLEITGGVSITGTDVESNGDHRVA HHHHHHHHHEECCCCCCHHHHHHHHHHCHHEEECCCCCEEECCEEEEECCCCCCCCCEEE MSLAIAALNATGITNIHHAETVNISYPSFVQTLQQVCTSNIN HHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCC >Mature Secondary Structure AVALVKVDFMVATVVSTKITNSQETLIIQNPKLGLSLCGNISIPGDKSISHRALMLGAI EEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCHHHHEEEHH AQGQTNIQGLLLGADPYSTAGCFSLLGANISQLNSEFVQVDGVGLLNLTEPSCVLDCGNS HCCCCCCEEEEEECCCCCHHHHHHHHCCCHHHHCCCEEEECCEEEEEECCCCEEEECCCC GTTMRLMLGILASHPEHFFTVTGDSSLVQRPMSRVIQPLTEMGAQIWGRKGNSLAPLAIQ CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEC GQKLRPIHYYSPIASAQVKSCILLAGLMAEGKTTITEPALSRDHSERMLKAFGAEIQVDP CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEECCCHHCCHHHHHHHHHCCCEEEECC ETNSVTVTGPAQLKGQDVVVPGDISSAAFWLVAAAIVPGSELVIENVGVNSTRTGILEVL CCCEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH ERMEVDIRQENHRVVAGEPVADLRVCYSSLKACEISGSIIPRLIDEIPILAVAAMFAEGT HHHCCCEECCCCEEEECCCHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCC TVIRDAAELRVKESDRLAVMATQLQKLGAKIIELPDGLEITGGVSITGTDVESNGDHRVA HHHHHHHHHEECCCCCCHHHHHHHHHHCHHEEECCCCCEEECCEEEEECCCCCCCCCEEE MSLAIAALNATGITNIHHAETVNISYPSFVQTLQQVCTSNIN HHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA