| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478160
Identifier: 113478160
GI number: 113478160
Start: 7374757
End: 7375392
Strand: Reverse
Name: 113478160
Synonym: Tery_4797
Alternate gene names: NA
Gene position: 7375392-7374757 (Counterclockwise)
Preceding gene: 113478162
Following gene: 113478159
Centisome position: 95.17
GC content: 39.78
Gene sequence:
>636_bases ATGAGCCAAAAGTGGGCTGTGTTTAGTGCTGCCATATTTCTAGTGACAGTGCCAGTATTTTTTCAAGCTCCAATGGTACG TCAACTACCTTGGTTAAGTTTAGTTATGACAGGCTTTTGGTTATGGCTAAGTTTAAAATTGCTTAAAAAGAGAGCTACTA ATTTATGGGGTGATTTATTGCTAGGGTTTACTTGGAGTTGGTTCACAGGTTCGATATACTGGGGTTGGCTACGACAGGAA CCATTTCTCCATTTACCAGTTGAAGCAATGTTTGTACCTTGGGCATTATGGTGTTTAAGCCACAATAGAGAAATGGTAGG GAACTGTTTTTATTTAGGCTCTCTACTAGGCACAGCAGTTACAGACGGATATTTCTATATAACTGGTCTGATTCCTTATT GGCGGAGTTTAATGATAGTTGAACCAGAAATGGCTTTAGAAGTATTTCAAGATGCTTTAACTCAAGTGCGTACTTCCTGG GGGGTAACTTGGATTATTCTGTTAGTAGGAATTCTTTTGTTTTTTGGTCTTGTACCTTTGCAGTCTAAAAGCTTACACTG GTGGGCCTTTGGCGCAGCAGTATTGAGCACTATTGTAGTAGATAGTCTGTTTTTGTTGGCTGCTTTTGTGGCCTAA
Upstream 100 bases:
>100_bases AAAAACCTTGTTTAATAATGCTTTTTTTGATATAATAACTAACTTTTTTCCAGAAAAGCAGGAAAAAATTTTTTTTGCTT TTGTTTTAGAAAAAATTAAA
Downstream 100 bases:
>100_bases GACAAAATTTCAGAGGGCTAGTAATTGTTGACTATAATCTAGCATTATCATAGATAATCTTTAATTATCTTTAGTCATAC TACTTGGATTCACAACTGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 211; Mature: 210
Protein sequence:
>211_residues MSQKWAVFSAAIFLVTVPVFFQAPMVRQLPWLSLVMTGFWLWLSLKLLKKRATNLWGDLLLGFTWSWFTGSIYWGWLRQE PFLHLPVEAMFVPWALWCLSHNREMVGNCFYLGSLLGTAVTDGYFYITGLIPYWRSLMIVEPEMALEVFQDALTQVRTSW GVTWIILLVGILLFFGLVPLQSKSLHWWAFGAAVLSTIVVDSLFLLAAFVA
Sequences:
>Translated_211_residues MSQKWAVFSAAIFLVTVPVFFQAPMVRQLPWLSLVMTGFWLWLSLKLLKKRATNLWGDLLLGFTWSWFTGSIYWGWLRQE PFLHLPVEAMFVPWALWCLSHNREMVGNCFYLGSLLGTAVTDGYFYITGLIPYWRSLMIVEPEMALEVFQDALTQVRTSW GVTWIILLVGILLFFGLVPLQSKSLHWWAFGAAVLSTIVVDSLFLLAAFVA >Mature_210_residues SQKWAVFSAAIFLVTVPVFFQAPMVRQLPWLSLVMTGFWLWLSLKLLKKRATNLWGDLLLGFTWSWFTGSIYWGWLRQEP FLHLPVEAMFVPWALWCLSHNREMVGNCFYLGSLLGTAVTDGYFYITGLIPYWRSLMIVEPEMALEVFQDALTQVRTSWG VTWIILLVGILLFFGLVPLQSKSLHWWAFGAAVLSTIVVDSLFLLAAFVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24221; Mature: 24090
Theoretical pI: Translated: 8.22; Mature: 8.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQKWAVFSAAIFLVTVPVFFQAPMVRQLPWLSLVMTGFWLWLSLKLLKKRATNLWGDLL CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGFTWSWFTGSIYWGWLRQEPFLHLPVEAMFVPWALWCLSHNREMVGNCFYLGSLLGTAV HHHHHHHHHCCEEEEECCCCCCEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH TDGYFYITGLIPYWRSLMIVEPEMALEVFQDALTQVRTSWGVTWIILLVGILLFFGLVPL CCCHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC QSKSLHWWAFGAAVLSTIVVDSLFLLAAFVA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure SQKWAVFSAAIFLVTVPVFFQAPMVRQLPWLSLVMTGFWLWLSLKLLKKRATNLWGDLL CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGFTWSWFTGSIYWGWLRQEPFLHLPVEAMFVPWALWCLSHNREMVGNCFYLGSLLGTAV HHHHHHHHHCCEEEEECCCCCCEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH TDGYFYITGLIPYWRSLMIVEPEMALEVFQDALTQVRTSWGVTWIILLVGILLFFGLVPL CCCHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC QSKSLHWWAFGAAVLSTIVVDSLFLLAAFVA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA