| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478123
Identifier: 113478123
GI number: 113478123
Start: 7305070
End: 7305693
Strand: Reverse
Name: 113478123
Synonym: Tery_4757
Alternate gene names: NA
Gene position: 7305693-7305070 (Counterclockwise)
Preceding gene: 113478126
Following gene: 113478122
Centisome position: 94.27
GC content: 42.47
Gene sequence:
>624_bases ATGACCTCTTTTAATGATGCTCGACAATATGCTCCTGCAACTGAACGCAATCGGGAATTTATCTTAGAAGTCTTACAACG ACTTTTACCTCCAACGGGCAACATTTTAGAAATTGCCAGTGGTACAGGAGAACACGCTATTTTCTTTTCTCCCCGTCTAA AACCACGTCAGTGGTTTCCTTCTGATCCTGATCCCATCTTGCGTGAGAGTATAGCAGCATGGCAAAAACATAGTCCGTCA GATAACCTGCATCTACCTCTTAATATTGATGCACGGGAGTCAGCTTGGGCGGTGGAGAAAGAAGACATTCAGATTAAAGC TATTGTCAATATTAATATGATTCATATTAGTCCTTGGTCTACTTGCCTGGGACTAATGGCGGGTGCGGGACGTTTGTTAC CTCAGAATGGGGTACTATATTTATACGGTCCATACAAACTGAGAGGGGAACATACAGCACCAAGTAATCTAGCATTTGAT CAGTCTCTACAATTTCAAAATCCTGAGTGGGGAGTAAGAAACTTAGAAGATGTGGTAGCGGCAGCAGAGAAGGAGGGGTT AAAATTTCAAGAGCAGGTGCAAATGCCAGCAAATAATTTATCTGTGGTTTTCCATAAGGGCTAA
Upstream 100 bases:
>100_bases AAACTTATTAAATTTTATATTTTTTGCTGTTTGTTACCTCTTGCCTTTGATCAAAATTGGATATATAGTTTAAATACTTA ACTAATAACTGAAAACTGAA
Downstream 100 bases:
>100_bases TATCACGTTTACCAAATCTCAAAAGTCTTGCTACATTTTTTGGAGAGGAGTTAATAGGGAATATTAGAAAATAAAAGTCT TTCCTAAACACAAAAAAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 207; Mature: 206
Protein sequence:
>207_residues MTSFNDARQYAPATERNREFILEVLQRLLPPTGNILEIASGTGEHAIFFSPRLKPRQWFPSDPDPILRESIAAWQKHSPS DNLHLPLNIDARESAWAVEKEDIQIKAIVNINMIHISPWSTCLGLMAGAGRLLPQNGVLYLYGPYKLRGEHTAPSNLAFD QSLQFQNPEWGVRNLEDVVAAAEKEGLKFQEQVQMPANNLSVVFHKG
Sequences:
>Translated_207_residues MTSFNDARQYAPATERNREFILEVLQRLLPPTGNILEIASGTGEHAIFFSPRLKPRQWFPSDPDPILRESIAAWQKHSPS DNLHLPLNIDARESAWAVEKEDIQIKAIVNINMIHISPWSTCLGLMAGAGRLLPQNGVLYLYGPYKLRGEHTAPSNLAFD QSLQFQNPEWGVRNLEDVVAAAEKEGLKFQEQVQMPANNLSVVFHKG >Mature_206_residues TSFNDARQYAPATERNREFILEVLQRLLPPTGNILEIASGTGEHAIFFSPRLKPRQWFPSDPDPILRESIAAWQKHSPSD NLHLPLNIDARESAWAVEKEDIQIKAIVNINMIHISPWSTCLGLMAGAGRLLPQNGVLYLYGPYKLRGEHTAPSNLAFDQ SLQFQNPEWGVRNLEDVVAAAEKEGLKFQEQVQMPANNLSVVFHKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI93102387, Length=203, Percent_Identity=36.4532019704434, Blast_Score=122, Evalue=2e-28, Organism=Homo sapiens, GI93102391, Length=151, Percent_Identity=33.7748344370861, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71998087, Length=201, Percent_Identity=32.8358208955224, Blast_Score=113, Evalue=8e-26, Organism=Drosophila melanogaster, GI28574095, Length=198, Percent_Identity=34.8484848484849, Blast_Score=122, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23279; Mature: 23148
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSFNDARQYAPATERNREFILEVLQRLLPPTGNILEIASGTGEHAIFFSPRLKPRQWFP CCCCCCHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCCCC SDPDPILRESIAAWQKHSPSDNLHLPLNIDARESAWAVEKEDIQIKAIVNINMIHISPWS CCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEECCCEEEEEEEEEEEEEECHHH TCLGLMAGAGRLLPQNGVLYLYGPYKLRGEHTAPSNLAFDQSLQFQNPEWGVRNLEDVVA HHHHHHHCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH AAEKEGLKFQEQVQMPANNLSVVFHKG HHHHCCCCHHHHHCCCCCCEEEEEECC >Mature Secondary Structure TSFNDARQYAPATERNREFILEVLQRLLPPTGNILEIASGTGEHAIFFSPRLKPRQWFP CCCCCHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCCCC SDPDPILRESIAAWQKHSPSDNLHLPLNIDARESAWAVEKEDIQIKAIVNINMIHISPWS CCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEECCCEEEEEEEEEEEEEECHHH TCLGLMAGAGRLLPQNGVLYLYGPYKLRGEHTAPSNLAFDQSLQFQNPEWGVRNLEDVVA HHHHHHHCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH AAEKEGLKFQEQVQMPANNLSVVFHKG HHHHCCCCHHHHHCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA