Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113478123

Identifier: 113478123

GI number: 113478123

Start: 7305070

End: 7305693

Strand: Reverse

Name: 113478123

Synonym: Tery_4757

Alternate gene names: NA

Gene position: 7305693-7305070 (Counterclockwise)

Preceding gene: 113478126

Following gene: 113478122

Centisome position: 94.27

GC content: 42.47

Gene sequence:

>624_bases
ATGACCTCTTTTAATGATGCTCGACAATATGCTCCTGCAACTGAACGCAATCGGGAATTTATCTTAGAAGTCTTACAACG
ACTTTTACCTCCAACGGGCAACATTTTAGAAATTGCCAGTGGTACAGGAGAACACGCTATTTTCTTTTCTCCCCGTCTAA
AACCACGTCAGTGGTTTCCTTCTGATCCTGATCCCATCTTGCGTGAGAGTATAGCAGCATGGCAAAAACATAGTCCGTCA
GATAACCTGCATCTACCTCTTAATATTGATGCACGGGAGTCAGCTTGGGCGGTGGAGAAAGAAGACATTCAGATTAAAGC
TATTGTCAATATTAATATGATTCATATTAGTCCTTGGTCTACTTGCCTGGGACTAATGGCGGGTGCGGGACGTTTGTTAC
CTCAGAATGGGGTACTATATTTATACGGTCCATACAAACTGAGAGGGGAACATACAGCACCAAGTAATCTAGCATTTGAT
CAGTCTCTACAATTTCAAAATCCTGAGTGGGGAGTAAGAAACTTAGAAGATGTGGTAGCGGCAGCAGAGAAGGAGGGGTT
AAAATTTCAAGAGCAGGTGCAAATGCCAGCAAATAATTTATCTGTGGTTTTCCATAAGGGCTAA

Upstream 100 bases:

>100_bases
AAACTTATTAAATTTTATATTTTTTGCTGTTTGTTACCTCTTGCCTTTGATCAAAATTGGATATATAGTTTAAATACTTA
ACTAATAACTGAAAACTGAA

Downstream 100 bases:

>100_bases
TATCACGTTTACCAAATCTCAAAAGTCTTGCTACATTTTTTGGAGAGGAGTTAATAGGGAATATTAGAAAATAAAAGTCT
TTCCTAAACACAAAAAAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MTSFNDARQYAPATERNREFILEVLQRLLPPTGNILEIASGTGEHAIFFSPRLKPRQWFPSDPDPILRESIAAWQKHSPS
DNLHLPLNIDARESAWAVEKEDIQIKAIVNINMIHISPWSTCLGLMAGAGRLLPQNGVLYLYGPYKLRGEHTAPSNLAFD
QSLQFQNPEWGVRNLEDVVAAAEKEGLKFQEQVQMPANNLSVVFHKG

Sequences:

>Translated_207_residues
MTSFNDARQYAPATERNREFILEVLQRLLPPTGNILEIASGTGEHAIFFSPRLKPRQWFPSDPDPILRESIAAWQKHSPS
DNLHLPLNIDARESAWAVEKEDIQIKAIVNINMIHISPWSTCLGLMAGAGRLLPQNGVLYLYGPYKLRGEHTAPSNLAFD
QSLQFQNPEWGVRNLEDVVAAAEKEGLKFQEQVQMPANNLSVVFHKG
>Mature_206_residues
TSFNDARQYAPATERNREFILEVLQRLLPPTGNILEIASGTGEHAIFFSPRLKPRQWFPSDPDPILRESIAAWQKHSPSD
NLHLPLNIDARESAWAVEKEDIQIKAIVNINMIHISPWSTCLGLMAGAGRLLPQNGVLYLYGPYKLRGEHTAPSNLAFDQ
SLQFQNPEWGVRNLEDVVAAAEKEGLKFQEQVQMPANNLSVVFHKG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI93102387, Length=203, Percent_Identity=36.4532019704434, Blast_Score=122, Evalue=2e-28,
Organism=Homo sapiens, GI93102391, Length=151, Percent_Identity=33.7748344370861, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71998087, Length=201, Percent_Identity=32.8358208955224, Blast_Score=113, Evalue=8e-26,
Organism=Drosophila melanogaster, GI28574095, Length=198, Percent_Identity=34.8484848484849, Blast_Score=122, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23279; Mature: 23148

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSFNDARQYAPATERNREFILEVLQRLLPPTGNILEIASGTGEHAIFFSPRLKPRQWFP
CCCCCCHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCCCC
SDPDPILRESIAAWQKHSPSDNLHLPLNIDARESAWAVEKEDIQIKAIVNINMIHISPWS
CCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEECCCEEEEEEEEEEEEEECHHH
TCLGLMAGAGRLLPQNGVLYLYGPYKLRGEHTAPSNLAFDQSLQFQNPEWGVRNLEDVVA
HHHHHHHCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
AAEKEGLKFQEQVQMPANNLSVVFHKG
HHHHCCCCHHHHHCCCCCCEEEEEECC
>Mature Secondary Structure 
TSFNDARQYAPATERNREFILEVLQRLLPPTGNILEIASGTGEHAIFFSPRLKPRQWFP
CCCCCHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCCCC
SDPDPILRESIAAWQKHSPSDNLHLPLNIDARESAWAVEKEDIQIKAIVNINMIHISPWS
CCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEECCCEEEEEEEEEEEEEECHHH
TCLGLMAGAGRLLPQNGVLYLYGPYKLRGEHTAPSNLAFDQSLQFQNPEWGVRNLEDVVA
HHHHHHHCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
AAEKEGLKFQEQVQMPANNLSVVFHKG
HHHHCCCCHHHHHCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA