| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478028
Identifier: 113478028
GI number: 113478028
Start: 7141761
End: 7143971
Strand: Reverse
Name: 113478028
Synonym: Tery_4645
Alternate gene names: NA
Gene position: 7143971-7141761 (Counterclockwise)
Preceding gene: 113478032
Following gene: 113478027
Centisome position: 92.18
GC content: 44.23
Gene sequence:
>2211_bases ATGACTACAACAACTCCAAAACCAACAACAGTCCCGGATTTTTGTGAAGGTATCCAATATTTTGGAAAAGCTTGGCCTGA TTTTGAAACCTACGGTAAAACACCAGCAATAGCAGAAGGAAGTAAAGCGATCGCTTCACCAAGTGACCCTACTGGCATAT ATCAAACCCTCCTCTACGCTGATGCTCTGCGTTATTTAATGTTACAAGTAACAGGCAGCAAAGCATCAGGACACCCAGGC GGTTTTGCCAGTCAAGCCGAAGCTTATGCAGCCCTAGTAATGTTAGGCTACAAAAATATTCTCACAGAGGTCGGACACCA CGCCCCCGGATTTTATAGCGCTGTATTTCTTGACCGCTCCCTAGAAGATATGAAAATCTTCAGTGTCCAACAAATGCGCG ATCGCTTCCGGGAAATGCACGGACTCCTCGGACACCTATCTGGCTATATTCCTGGTTTACTCAACCCTGCCGGGCCACTG GGACAAGGTCAACATTTCGCCATGGCAGCAGCATTATTACATCAAAACACCCTATTTCCTTTCACCTTAGGGGACGGTGG TATGGGAGAACCATATCCAGTCAGCAGTATGATGCACTTTAACACTGCCTATCCTAATGTTACCAACTTTTTACCAGTAT TAGTATGGAACGGTTATAGTCAAGAACACCACAGCATGGTTTCCACAAAAAGTAATGCAGAAATGATTAGCTACTGGAAA GGCAACGGTTTTGCAGAAGTCATACTGGTAGATGCTAAGGACTTCGACGACCAAAACCAACCAGGAGACTATATTGACAG TAGTGCCTTCTCTTTAGAAAAACGCCTAGAATTTACCAAAGCGGTATTAGAAAATGTTGACAAAGCAGCAAAATCTGCTC TTGATGGTAAACTCACGATTTTTATTATCAAACAACTCAAGGGGGCCGGGGTTCACGCCAGAGGTTCAAAATCTCACAAC CTCTATCCTAAAGACACCCTCGATAGTCCCCAAATTATCAATACTCTCAAAGAACGTGCCTTATCAGTAGCAGCTTGGGA GTTAGTACGAAAAAATTGCGAACGTGCTGGTGGAGGTCCGGCATCTAAGACTGTTGTGACTGAATTTGAGTATCCACTAA CAGAATTAGGTCAACTACCTTTAGAAGAATATACAGTTGGTGGGGACCCCAAAGTTGCCACAACTGCCATGGGAGCATTA ATAGCTCATGTCGGTCAAAAAGACCCTCATTTCTTGCTAACAAATGCTGATGGTAACGCTGCATCAGGTATTAATAATGT TAACCAAGCATTGAAAATTATTCACCCCACCCCTGACGATATTTATTTCCAAGGTCCAGGAGGTCAGGTTTATGAACCTT TGAGCGAAGACGCTTGTGCTGGAATGGCTGCTGCTTTAGCATTGATGGGAGCCCGGACAGTTTGGTGTTCTTATGAATCT TTTGCTATTAACGGGGTACCTATTTGGCAAACTGTTACTCAAGCAATGGCGGAGTTACGTCACCTGACTCCTTCGACAAT TACATTATTTACTGCTGGAGCATTGGAACAGGGGCGCAATGGTTGGACTCACCAACGCCCGGAAATTGAAGCTTATTTTG CTGCGATGATGCGGAATGGAAATGTGTTCGCCCTTTTCCCACCTGATGCTAATAGTATTCAAGTTTGTTATGACTGGGCG CTGAGTACTAAAAATAAGGGTGTGACTATTACTGCTAGTAAGTCACCTTTACCTATTCGGACTACTTTTGAACAGGCAAG ACAAGGGTTAAAGGATGGTGCTGTTATTCTTCAAGAGGTTAAAGGGGGTCAGACTGTTGTGTTTGCAGTACTGGGAGATC TGCCATTAATTCCAGTATTTGAAGCTGCTGCCTATTTGGAAACTAAAGGTATTGGGGTACGGATAGTTTCAGTAATTAAT CCCCGGCGCTTGTACCGTCCCCAGGATACAGGTTGGAATACTTGTTCTGAAGCTGATGGCGGTTTTTTGGATGATGCTGG TTTTGAGGAATTATTCGGTGGTGATGCTTTAATTGCTGTGACTGGTGGCGCCAGTTTGATGTTAGAACCAATTATGTTAC GGAGTCAGGTTAAGCGGGATACCTTTGCTTGGCGTCGAGGGGAGACTGCTTCTAGTGCTGGTGAGGTGATGGCTTTTAAT GGTATTACTGCTGAAACTTTGACTAAGCGGGCTATCGAATTAGTAGATTAA
Upstream 100 bases:
>100_bases TAGTATTATTACTACATCAAATAATTAGTCAAAAGAAATTAAAATCGATCCCCGTAGATGTTAAATTGAGATAAAAAGAG CAAAATACAGGAAAATTGCT
Downstream 100 bases:
>100_bases ATTTTAGGGGTTTAGTTGTAAGCATTCAGCTATTAGCTAGAAGGAGGTGAAATGCCTCCAATAATAACAGGACTTACGTA CGAGCACTACACCCAGTGAG
Product: transketolase, central region
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 736; Mature: 735
Protein sequence:
>736_residues MTTTTPKPTTVPDFCEGIQYFGKAWPDFETYGKTPAIAEGSKAIASPSDPTGIYQTLLYADALRYLMLQVTGSKASGHPG GFASQAEAYAALVMLGYKNILTEVGHHAPGFYSAVFLDRSLEDMKIFSVQQMRDRFREMHGLLGHLSGYIPGLLNPAGPL GQGQHFAMAAALLHQNTLFPFTLGDGGMGEPYPVSSMMHFNTAYPNVTNFLPVLVWNGYSQEHHSMVSTKSNAEMISYWK GNGFAEVILVDAKDFDDQNQPGDYIDSSAFSLEKRLEFTKAVLENVDKAAKSALDGKLTIFIIKQLKGAGVHARGSKSHN LYPKDTLDSPQIINTLKERALSVAAWELVRKNCERAGGGPASKTVVTEFEYPLTELGQLPLEEYTVGGDPKVATTAMGAL IAHVGQKDPHFLLTNADGNAASGINNVNQALKIIHPTPDDIYFQGPGGQVYEPLSEDACAGMAAALALMGARTVWCSYES FAINGVPIWQTVTQAMAELRHLTPSTITLFTAGALEQGRNGWTHQRPEIEAYFAAMMRNGNVFALFPPDANSIQVCYDWA LSTKNKGVTITASKSPLPIRTTFEQARQGLKDGAVILQEVKGGQTVVFAVLGDLPLIPVFEAAAYLETKGIGVRIVSVIN PRRLYRPQDTGWNTCSEADGGFLDDAGFEELFGGDALIAVTGGASLMLEPIMLRSQVKRDTFAWRRGETASSAGEVMAFN GITAETLTKRAIELVD
Sequences:
>Translated_736_residues MTTTTPKPTTVPDFCEGIQYFGKAWPDFETYGKTPAIAEGSKAIASPSDPTGIYQTLLYADALRYLMLQVTGSKASGHPG GFASQAEAYAALVMLGYKNILTEVGHHAPGFYSAVFLDRSLEDMKIFSVQQMRDRFREMHGLLGHLSGYIPGLLNPAGPL GQGQHFAMAAALLHQNTLFPFTLGDGGMGEPYPVSSMMHFNTAYPNVTNFLPVLVWNGYSQEHHSMVSTKSNAEMISYWK GNGFAEVILVDAKDFDDQNQPGDYIDSSAFSLEKRLEFTKAVLENVDKAAKSALDGKLTIFIIKQLKGAGVHARGSKSHN LYPKDTLDSPQIINTLKERALSVAAWELVRKNCERAGGGPASKTVVTEFEYPLTELGQLPLEEYTVGGDPKVATTAMGAL IAHVGQKDPHFLLTNADGNAASGINNVNQALKIIHPTPDDIYFQGPGGQVYEPLSEDACAGMAAALALMGARTVWCSYES FAINGVPIWQTVTQAMAELRHLTPSTITLFTAGALEQGRNGWTHQRPEIEAYFAAMMRNGNVFALFPPDANSIQVCYDWA LSTKNKGVTITASKSPLPIRTTFEQARQGLKDGAVILQEVKGGQTVVFAVLGDLPLIPVFEAAAYLETKGIGVRIVSVIN PRRLYRPQDTGWNTCSEADGGFLDDAGFEELFGGDALIAVTGGASLMLEPIMLRSQVKRDTFAWRRGETASSAGEVMAFN GITAETLTKRAIELVD >Mature_735_residues TTTTPKPTTVPDFCEGIQYFGKAWPDFETYGKTPAIAEGSKAIASPSDPTGIYQTLLYADALRYLMLQVTGSKASGHPGG FASQAEAYAALVMLGYKNILTEVGHHAPGFYSAVFLDRSLEDMKIFSVQQMRDRFREMHGLLGHLSGYIPGLLNPAGPLG QGQHFAMAAALLHQNTLFPFTLGDGGMGEPYPVSSMMHFNTAYPNVTNFLPVLVWNGYSQEHHSMVSTKSNAEMISYWKG NGFAEVILVDAKDFDDQNQPGDYIDSSAFSLEKRLEFTKAVLENVDKAAKSALDGKLTIFIIKQLKGAGVHARGSKSHNL YPKDTLDSPQIINTLKERALSVAAWELVRKNCERAGGGPASKTVVTEFEYPLTELGQLPLEEYTVGGDPKVATTAMGALI AHVGQKDPHFLLTNADGNAASGINNVNQALKIIHPTPDDIYFQGPGGQVYEPLSEDACAGMAAALALMGARTVWCSYESF AINGVPIWQTVTQAMAELRHLTPSTITLFTAGALEQGRNGWTHQRPEIEAYFAAMMRNGNVFALFPPDANSIQVCYDWAL STKNKGVTITASKSPLPIRTTFEQARQGLKDGAVILQEVKGGQTVVFAVLGDLPLIPVFEAAAYLETKGIGVRIVSVINP RRLYRPQDTGWNTCSEADGGFLDDAGFEELFGGDALIAVTGGASLMLEPIMLRSQVKRDTFAWRRGETASSAGEVMAFNG ITAETLTKRAIELVD
Specific function: Unknown
COG id: COG3957
COG function: function code G; Phosphoketolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the XFP family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005593 - InterPro: IPR018969 - InterPro: IPR019790 - InterPro: IPR018970 - InterPro: IPR019789 [H]
Pfam domain/function: PF03894 XFP; PF09363 XFP_C; PF09364 XFP_N [H]
EC number: NA
Molecular weight: Translated: 79664; Mature: 79533
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTTTPKPTTVPDFCEGIQYFGKAWPDFETYGKTPAIAEGSKAIASPSDPTGIYQTLLYA CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH DALRYLMLQVTGSKASGHPGGFASQAEAYAALVMLGYKNILTEVGHHAPGFYSAVFLDRS HHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC LEDMKIFSVQQMRDRFREMHGLLGHLSGYIPGLLNPAGPLGQGQHFAMAAALLHQNTLFP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCE FTLGDGGMGEPYPVSSMMHFNTAYPNVTNFLPVLVWNGYSQEHHSMVSTKSNAEMISYWK EECCCCCCCCCCCCCHHHCCCCCCCCHHHCCEEEEECCCCHHHHHHHHCCCCCCEEEEEC GNGFAEVILVDAKDFDDQNQPGDYIDSSAFSLEKRLEFTKAVLENVDKAAKSALDGKLTI CCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE FIIKQLKGAGVHARGSKSHNLYPKDTLDSPQIINTLKERALSVAAWELVRKNCERAGGGP EEEEHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC ASKTVVTEFEYPLTELGQLPLEEYTVGGDPKVATTAMGALIAHVGQKDPHFLLTNADGNA CCCCEEEECCCCHHHHCCCCHHHEECCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC ASGINNVNQALKIIHPTPDDIYFQGPGGQVYEPLSEDACAGMAAALALMGARTVWCSYES CCCHHHHHHHHEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHEEECCCC FAINGVPIWQTVTQAMAELRHLTPSTITLFTAGALEQGRNGWTHQRPEIEAYFAAMMRNG EEECCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCHHHHHHHHHHCCC NVFALFPPDANSIQVCYDWALSTKNKGVTITASKSPLPIRTTFEQARQGLKDGAVILQEV CEEEEECCCCCCEEEEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHC KGGQTVVFAVLGDLPLIPVFEAAAYLETKGIGVRIVSVINPRRLYRPQDTGWNTCSEADG CCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCCCCCCCCCCC GFLDDAGFEELFGGDALIAVTGGASLMLEPIMLRSQVKRDTFAWRRGETASSAGEVMAFN CCCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEC GITAETLTKRAIELVD CCCHHHHHHHHHHHCC >Mature Secondary Structure TTTTPKPTTVPDFCEGIQYFGKAWPDFETYGKTPAIAEGSKAIASPSDPTGIYQTLLYA CCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH DALRYLMLQVTGSKASGHPGGFASQAEAYAALVMLGYKNILTEVGHHAPGFYSAVFLDRS HHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC LEDMKIFSVQQMRDRFREMHGLLGHLSGYIPGLLNPAGPLGQGQHFAMAAALLHQNTLFP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCE FTLGDGGMGEPYPVSSMMHFNTAYPNVTNFLPVLVWNGYSQEHHSMVSTKSNAEMISYWK EECCCCCCCCCCCCCHHHCCCCCCCCHHHCCEEEEECCCCHHHHHHHHCCCCCCEEEEEC GNGFAEVILVDAKDFDDQNQPGDYIDSSAFSLEKRLEFTKAVLENVDKAAKSALDGKLTI CCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE FIIKQLKGAGVHARGSKSHNLYPKDTLDSPQIINTLKERALSVAAWELVRKNCERAGGGP EEEEHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC ASKTVVTEFEYPLTELGQLPLEEYTVGGDPKVATTAMGALIAHVGQKDPHFLLTNADGNA CCCCEEEECCCCHHHHCCCCHHHEECCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC ASGINNVNQALKIIHPTPDDIYFQGPGGQVYEPLSEDACAGMAAALALMGARTVWCSYES CCCHHHHHHHHEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHEEECCCC FAINGVPIWQTVTQAMAELRHLTPSTITLFTAGALEQGRNGWTHQRPEIEAYFAAMMRNG EEECCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCHHHHHHHHHHCCC NVFALFPPDANSIQVCYDWALSTKNKGVTITASKSPLPIRTTFEQARQGLKDGAVILQEV CEEEEECCCCCCEEEEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHC KGGQTVVFAVLGDLPLIPVFEAAAYLETKGIGVRIVSVINPRRLYRPQDTGWNTCSEADG CCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCCCCCCCCCCC GFLDDAGFEELFGGDALIAVTGGASLMLEPIMLRSQVKRDTFAWRRGETASSAGEVMAFN CCCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEC GITAETLTKRAIELVD CCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA