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The map label for this gene is yibD [C]

Identifier: 113477976

GI number: 113477976

Start: 7057924

End: 7058847

Strand: Reverse

Name: yibD [C]

Synonym: Tery_4588

Alternate gene names: 113477976

Gene position: 7058847-7057924 (Counterclockwise)

Preceding gene: 113477977

Following gene: 113477974

Centisome position: 91.08

GC content: 34.74

Gene sequence:

>924_bases
ATGTTGGTTTCTGTAGTTATACCAATTTATAATGGTGAGAAAGATTTACCAGACTTGATAGAATGTCTACGATCGCAAAC
CTACACTCTTGAGCAAGTAGAATATTTATTAGTAGATAACAATAGTAGCGATCATAGTAGTTCCATTATTCAAGCAGCAG
CAGAGTCAAAGGCAAATACAATTCGCCCACTGCAAGAAAATCAGATTCAAAGTTCTTATGCTGCTCGTAATGCTGGTATT
CGGGCAGCTAATAGCGAAATAATTGCTTTTACTGATGCTGACTGTCGTCCTCAACCTCAATGGTTAGAAAATTTAATTCA
GCCATTTTCTGACCCTAATGTTGGTATTGTAGTAGGAGAAGTAATTTCTTTGCCTGGTAAAAGTTTATTAGAAAAATATG
CAGATAAACAAGAGATTCTCTCCCAAAAATATACTTTAGCTCATCCATTTTGCCCTTATGGTCAAACTGCTAATTTAGCT
ATTAGAAAGCAAGTATTTTTAGAAGTAGGATTATTTCGTTCTTACTTAACAACAGGTGGAGATGCTGATATTTGTTGGCG
GATTTTACGAGAAACATCTTATCAGTTTAAATTTGTAGAAAATGCGATAGTTAGACATCGACATCGTTCAACATGGAAGG
ATTTACAAAGTCAATGGCGCAGGTATGGAAAGTCAAATAAATATTTGCATGAACTGTACGGTGTTGATTTAATGAGAGAG
TTGAAAACTAAAGAATATTTGTATCGTTTGAGCAGATGGTTATTAAAAGAATTACCGTTAACAACGGTGAAAATTATATC
AGGTAAAGCCGAATTAGTGGAGTTATTTAATACTCCTATTGGTTTGCTAAATGGTAGGGCAAGAATTATCGGTCAAAAAG
AAGCAAGATTACCAGATAAAGCGCGACGAATTGATAGGTTTTAG

Upstream 100 bases:

>100_bases
TATCAGGTTGGTTGGAAACTCAAGTGGTAGGAACTTTTTACTTAGTTAGTTTAATTTTAGTTAGCTTCTGCTTATTATAT
TAGTAATTGAAAGACTGAAA

Downstream 100 bases:

>100_bases
TTAGGTATATATCAGCATTTATTGGATTGTGCTGCATAAAGAGCTGTTAGCTATTAGTTATTAATTCATGATCACATAAT
TCAGGAGGAATTAGTCTCTA

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MLVSVVIPIYNGEKDLPDLIECLRSQTYTLEQVEYLLVDNNSSDHSSSIIQAAAESKANTIRPLQENQIQSSYAARNAGI
RAANSEIIAFTDADCRPQPQWLENLIQPFSDPNVGIVVGEVISLPGKSLLEKYADKQEILSQKYTLAHPFCPYGQTANLA
IRKQVFLEVGLFRSYLTTGGDADICWRILRETSYQFKFVENAIVRHRHRSTWKDLQSQWRRYGKSNKYLHELYGVDLMRE
LKTKEYLYRLSRWLLKELPLTTVKIISGKAELVELFNTPIGLLNGRARIIGQKEARLPDKARRIDRF

Sequences:

>Translated_307_residues
MLVSVVIPIYNGEKDLPDLIECLRSQTYTLEQVEYLLVDNNSSDHSSSIIQAAAESKANTIRPLQENQIQSSYAARNAGI
RAANSEIIAFTDADCRPQPQWLENLIQPFSDPNVGIVVGEVISLPGKSLLEKYADKQEILSQKYTLAHPFCPYGQTANLA
IRKQVFLEVGLFRSYLTTGGDADICWRILRETSYQFKFVENAIVRHRHRSTWKDLQSQWRRYGKSNKYLHELYGVDLMRE
LKTKEYLYRLSRWLLKELPLTTVKIISGKAELVELFNTPIGLLNGRARIIGQKEARLPDKARRIDRF
>Mature_307_residues
MLVSVVIPIYNGEKDLPDLIECLRSQTYTLEQVEYLLVDNNSSDHSSSIIQAAAESKANTIRPLQENQIQSSYAARNAGI
RAANSEIIAFTDADCRPQPQWLENLIQPFSDPNVGIVVGEVISLPGKSLLEKYADKQEILSQKYTLAHPFCPYGQTANLA
IRKQVFLEVGLFRSYLTTGGDADICWRILRETSYQFKFVENAIVRHRHRSTWKDLQSQWRRYGKSNKYLHELYGVDLMRE
LKTKEYLYRLSRWLLKELPLTTVKIISGKAELVELFNTPIGLLNGRARIIGQKEARLPDKARRIDRF

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 35235; Mature: 35235

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVSVVIPIYNGEKDLPDLIECLRSQTYTLEQVEYLLVDNNSSDHSSSIIQAAAESKANT
CEEEEEEEEECCCCCCHHHHHHHHCCCCCHHHEEEEEEECCCCCHHHHHHHHHHHHHHHH
IRPLQENQIQSSYAARNAGIRAANSEIIAFTDADCRPQPQWLENLIQPFSDPNVGIVVGE
CCCHHHHHHHHHHHHHHCCCEECCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCEEEEHH
VISLPGKSLLEKYADKQEILSQKYTLAHPFCPYGQTANLAIRKQVFLEVGLFRSYLTTGG
HHHCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
DADICWRILRETSYQFKFVENAIVRHRHRSTWKDLQSQWRRYGKSNKYLHELYGVDLMRE
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LKTKEYLYRLSRWLLKELPLTTVKIISGKAELVELFNTPIGLLNGRARIIGQKEARLPDK
HHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHCCCHHHHCCCHHEECCHHHCCCHH
ARRIDRF
HHHCCCC
>Mature Secondary Structure
MLVSVVIPIYNGEKDLPDLIECLRSQTYTLEQVEYLLVDNNSSDHSSSIIQAAAESKANT
CEEEEEEEEECCCCCCHHHHHHHHCCCCCHHHEEEEEEECCCCCHHHHHHHHHHHHHHHH
IRPLQENQIQSSYAARNAGIRAANSEIIAFTDADCRPQPQWLENLIQPFSDPNVGIVVGE
CCCHHHHHHHHHHHHHHCCCEECCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCEEEEHH
VISLPGKSLLEKYADKQEILSQKYTLAHPFCPYGQTANLAIRKQVFLEVGLFRSYLTTGG
HHHCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
DADICWRILRETSYQFKFVENAIVRHRHRSTWKDLQSQWRRYGKSNKYLHELYGVDLMRE
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LKTKEYLYRLSRWLLKELPLTTVKIISGKAELVELFNTPIGLLNGRARIIGQKEARLPDK
HHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHCCCHHHHCCCHHEECCHHHCCCHH
ARRIDRF
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7836301 [H]