| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477748
Identifier: 113477748
GI number: 113477748
Start: 6697857
End: 6698822
Strand: Reverse
Name: 113477748
Synonym: Tery_4344
Alternate gene names: NA
Gene position: 6698822-6697857 (Counterclockwise)
Preceding gene: 113477750
Following gene: 113477746
Centisome position: 86.44
GC content: 38.1
Gene sequence:
>966_bases ATGGATATGTCAAAATTACTGAAGAAACTTTCAGTTATCGTCGCTGGAACAAGTTTTTTTTCCATAACAGGAACAACTGT AGCTGAGGCAATTTCTATAGCCCCTAGGAATAATGAACAAGATTTAGCATCGAAGATTCTCGGAAGTGGAATTACACTAA TGCCAGGTTCTGTTAATTATATTGGTGCTACTGGTGCTTCAGGATTTTTCCAAAATGGAATTAAATCAGGAATAGGTATT GATGAAGGTATTATTCTAAGTACAGGTTTAGCAGAACATGCAGTAGGTCCGAATAACTTAAGTAAACGAAGTACTGTGAA TGGGCTCTCTGGCGATCCTGATTTGGGTGCCTTGATGCCTGGGGTTTCAACTAGTGATGCTACTATTCTAGAGTTTCAGT TTAAAACAGCAGGAGGCAATATTTTCTTTAATTATGTGTTTGCCTCGGAAGAATATAACCAATATGTTGGCAGTGCCTTC AACGATGTCTTCGGCTTCTTTTTAAACGGAAAAAATATTGCTCTCATTCCTAATACATCTACTCCAGTTGCAATTAGCAC AGTAAACGGAGGCAACCCTTTTGGAACTAATGGGAGTAACCCTGAGTTTTTCAATAATAATGATGGAGAAAGGTTCAATA TATCATTTGATGGGTTCACTGATGTCTTTACTGCCCAAGCGTTTGGACTAGATCCTGGTGTTCATAATATCAAACTAGCG ATAGCTGATGGAGGAGATTCTTCTCTTGATTCTGCCGTGTTTATTCAGGGAAAGACTTTTTCTACTCAAACAACAAAGTA TGTTCCTGAGCCTTCCGCTGATCCTGCCGTGTTTATTCCGGAAAATACTTTTTCTGATCAACCAACAAATAAACTAACAA AGCATGTTCCTGAGCCTTCCGCAATGATCGGTTTATTAGTAACTAGTTTGGGCAGTTTCTTTTTCAAAAAAGTCTACAAA GTTTAA
Upstream 100 bases:
>100_bases CTTATAAACTCAAATGATACCTTAATTCACAAACGCCCAAATTTTGATGTTGTTTGATATAATAATATGGTATACTTTAT TTAATTGGAGTAATAAGGTA
Downstream 100 bases:
>100_bases TAACTAATTTCTTCCACTGAGGATATTAGATAGCGATCGAGCCACAATGATCGGTTTATGAGTAACTAGTTTGGGCAGTT TCTTTTTCAAGAAAGTCTAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 321; Mature: 321
Protein sequence:
>321_residues MDMSKLLKKLSVIVAGTSFFSITGTTVAEAISIAPRNNEQDLASKILGSGITLMPGSVNYIGATGASGFFQNGIKSGIGI DEGIILSTGLAEHAVGPNNLSKRSTVNGLSGDPDLGALMPGVSTSDATILEFQFKTAGGNIFFNYVFASEEYNQYVGSAF NDVFGFFLNGKNIALIPNTSTPVAISTVNGGNPFGTNGSNPEFFNNNDGERFNISFDGFTDVFTAQAFGLDPGVHNIKLA IADGGDSSLDSAVFIQGKTFSTQTTKYVPEPSADPAVFIPENTFSDQPTNKLTKHVPEPSAMIGLLVTSLGSFFFKKVYK V
Sequences:
>Translated_321_residues MDMSKLLKKLSVIVAGTSFFSITGTTVAEAISIAPRNNEQDLASKILGSGITLMPGSVNYIGATGASGFFQNGIKSGIGI DEGIILSTGLAEHAVGPNNLSKRSTVNGLSGDPDLGALMPGVSTSDATILEFQFKTAGGNIFFNYVFASEEYNQYVGSAF NDVFGFFLNGKNIALIPNTSTPVAISTVNGGNPFGTNGSNPEFFNNNDGERFNISFDGFTDVFTAQAFGLDPGVHNIKLA IADGGDSSLDSAVFIQGKTFSTQTTKYVPEPSADPAVFIPENTFSDQPTNKLTKHVPEPSAMIGLLVTSLGSFFFKKVYK V >Mature_321_residues MDMSKLLKKLSVIVAGTSFFSITGTTVAEAISIAPRNNEQDLASKILGSGITLMPGSVNYIGATGASGFFQNGIKSGIGI DEGIILSTGLAEHAVGPNNLSKRSTVNGLSGDPDLGALMPGVSTSDATILEFQFKTAGGNIFFNYVFASEEYNQYVGSAF NDVFGFFLNGKNIALIPNTSTPVAISTVNGGNPFGTNGSNPEFFNNNDGERFNISFDGFTDVFTAQAFGLDPGVHNIKLA IADGGDSSLDSAVFIQGKTFSTQTTKYVPEPSADPAVFIPENTFSDQPTNKLTKHVPEPSAMIGLLVTSLGSFFFKKVYK V
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33785; Mature: 33785
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDMSKLLKKLSVIVAGTSFFSITGTTVAEAISIAPRNNEQDLASKILGSGITLMPGSVNY CCHHHHHHHHHEEEECCEEEEECCHHHHHHHEECCCCCHHHHHHHHHHCCCEECCCCCEE IGATGASGFFQNGIKSGIGIDEGIILSTGLAEHAVGPNNLSKRSTVNGLSGDPDLGALMP EECCCCCHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHCC GVSTSDATILEFQFKTAGGNIFFNYVFASEEYNQYVGSAFNDVFGFFLNGKNIALIPNTS CCCCCCCEEEEEEEEECCCEEEEEEEEECCHHHHHHHHHHHHHHHEEECCCEEEEECCCC TPVAISTVNGGNPFGTNGSNPEFFNNNDGERFNISFDGFTDVFTAQAFGLDPGVHNIKLA CCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCEEEEE IADGGDSSLDSAVFIQGKTFSTQTTKYVPEPSADPAVFIPENTFSDQPTNKLTKHVPEPS EECCCCCCCCCEEEEECCCCCCCCCEECCCCCCCCEEEECCCCCCCCCHHHHHHHCCCHH AMIGLLVTSLGSFFFKKVYKV HHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDMSKLLKKLSVIVAGTSFFSITGTTVAEAISIAPRNNEQDLASKILGSGITLMPGSVNY CCHHHHHHHHHEEEECCEEEEECCHHHHHHHEECCCCCHHHHHHHHHHCCCEECCCCCEE IGATGASGFFQNGIKSGIGIDEGIILSTGLAEHAVGPNNLSKRSTVNGLSGDPDLGALMP EECCCCCHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHCC GVSTSDATILEFQFKTAGGNIFFNYVFASEEYNQYVGSAFNDVFGFFLNGKNIALIPNTS CCCCCCCEEEEEEEEECCCEEEEEEEEECCHHHHHHHHHHHHHHHEEECCCEEEEECCCC TPVAISTVNGGNPFGTNGSNPEFFNNNDGERFNISFDGFTDVFTAQAFGLDPGVHNIKLA CCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCEEEEE IADGGDSSLDSAVFIQGKTFSTQTTKYVPEPSADPAVFIPENTFSDQPTNKLTKHVPEPS EECCCCCCCCCEEEEECCCCCCCCCEECCCCCCCCEEEECCCCCCCCCHHHHHHHCCCHH AMIGLLVTSLGSFFFKKVYKV HHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA