Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113477716

Identifier: 113477716

GI number: 113477716

Start: 6644325

End: 6644747

Strand: Reverse

Name: 113477716

Synonym: Tery_4309

Alternate gene names: NA

Gene position: 6644747-6644325 (Counterclockwise)

Preceding gene: 113477717

Following gene: 113477715

Centisome position: 85.74

GC content: 29.55

Gene sequence:

>423_bases
ATGAACCGTTCTATTATTGAAACTGAACTACAAGCATCAGAAACAAAATCTGATATAGATAATTATTTCGACAAGATAGT
GAAATATATTCCTTCAGAAATAGTAGGAGTATGGATTACTATTAAAACTATGGTAGAAGGAAACAATAATGTTCCTGAAA
ATAGTATTTTATGGGGAATATTTATTTTTTGTTTGTTCTTAACTTTCGCTTATATTTGTTTATTACCAGTCAGTTCAAAG
AAGAAACCTACTATTAAACAAGGGATTATTTCCGTAGGAGCATTTATAGTTTGGGCGATCGCTATTGGTGGAAAACCATT
TATTTCTATTAGTTGGTATCAGCCTATTTATGGCTCAATATTAATGGTGCTTTATACAGTAGTTATTCCTCTAATTCCTC
TAGAAAAACGTAAATTAAGTTAA

Upstream 100 bases:

>100_bases
GTGAAGGTATTTTGTTTAGTTCTATTCATCATGATTTAGAACAAAAATCAATTCAACTTAACTAAATTCTATTTATTAAA
TCATTAAATTACTGAAAAAT

Downstream 100 bases:

>100_bases
TTGAATAAGCACAATAATAATCAACTAATTTAAATTTAAAATCAAATATATATTGAGCGATCGCTACTCCTAAAAAAAAA
TCTATATTAGTTATTTTCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MNRSIIETELQASETKSDIDNYFDKIVKYIPSEIVGVWITIKTMVEGNNNVPENSILWGIFIFCLFLTFAYICLLPVSSK
KKPTIKQGIISVGAFIVWAIAIGGKPFISISWYQPIYGSILMVLYTVVIPLIPLEKRKLS

Sequences:

>Translated_140_residues
MNRSIIETELQASETKSDIDNYFDKIVKYIPSEIVGVWITIKTMVEGNNNVPENSILWGIFIFCLFLTFAYICLLPVSSK
KKPTIKQGIISVGAFIVWAIAIGGKPFISISWYQPIYGSILMVLYTVVIPLIPLEKRKLS
>Mature_140_residues
MNRSIIETELQASETKSDIDNYFDKIVKYIPSEIVGVWITIKTMVEGNNNVPENSILWGIFIFCLFLTFAYICLLPVSSK
KKPTIKQGIISVGAFIVWAIAIGGKPFISISWYQPIYGSILMVLYTVVIPLIPLEKRKLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15805; Mature: 15805

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRSIIETELQASETKSDIDNYFDKIVKYIPSEIVGVWITIKTMVEGNNNVPENSILWGI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEECCCCCCCCHHHHHHH
FIFCLFLTFAYICLLPVSSKKKPTIKQGIISVGAFIVWAIAIGGKPFISISWYQPIYGSI
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH
LMVLYTVVIPLIPLEKRKLS
HHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNRSIIETELQASETKSDIDNYFDKIVKYIPSEIVGVWITIKTMVEGNNNVPENSILWGI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEECCCCCCCCHHHHHHH
FIFCLFLTFAYICLLPVSSKKKPTIKQGIISVGAFIVWAIAIGGKPFISISWYQPIYGSI
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH
LMVLYTVVIPLIPLEKRKLS
HHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA