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The map label for this gene is rpfG [H]

Identifier: 113477705

GI number: 113477705

Start: 6619684

End: 6621075

Strand: Reverse

Name: rpfG [H]

Synonym: Tery_4298

Alternate gene names: 113477705

Gene position: 6621075-6619684 (Counterclockwise)

Preceding gene: 113477707

Following gene: 113477704

Centisome position: 85.43

GC content: 37.21

Gene sequence:

>1392_bases
ATGGATTCCAAAGCAACTTTAAATCAACTTAAAAAAAGAAGTCCAGAAGGAAAATTGCCCGGCAGTTATGGAGTTTATTT
TAAAAATACACTAGTAGCTCTATGTCATGCTTTAGAAGACCACATATTACAAGTCAGCAGTCAACATCCAGAAGCTAAAC
CATTAGTTTTAGCAACATTTCAACAAGGAAAATGGTATCTGCAAGAAGCAGACCGCTATCAAGAATTAGCTCAATGTAGC
CGTCACATTATGATAGCAGCAGTAGCAGATAGTGGTTTATCCAAACATCCTACAAGTAAGTTAGATAATGTATCTTTAAT
TAATCTAGAAACAACAGACAGTATAGTTAATGAATGGAATCTAATTATTCTAGCTCCAAGTTACCGAGCTATGGTACTTT
GCCATGAACTCTCTGAAGATGAATATTTACCCAACTGTAAACCAACTGTAGATATAGAAAGAAAATTCTATGGTTTATGG
ACTTTTGATGAAACTTTAGTAGCTAAAGCAGCCGAAATTCTTGTAGAAAGATGTCGCCCTTACAACCCAGAACTCGCAGA
TACAATTCAAAAACAACATCAGGAAATTATTGAGACTAAAGGTATAGCACCCACAGATATGAGCGGTGTAGTTTCTAGAA
TAGTTTCTTACCTGCAAAAAACTCAGGAACAAATGATTGCTATCAATAGACAAACAAGGGAACTTTGGGAACTAGAAGAT
CAAGCATTACGCGTGACTCACAACCTTAATACTAACAAGTTGCAAGCATTTATACGAATGGCACAGAAAGTAGACGAGCA
AGATCAAACAAACCCCCTTGCATCTTTGCAAGTAGCAGCTTTATGTGAAACTTTAGGGAACTTGTTAGATTTACCAACCC
CAAAATTGCGACGTTTACGGTTGGCAGGATTATTGTTTCGAGTTGGCTTAGTTTCAGCTCCAAAAGAAGTATTTTCTAAA
ACACCTGATGAGTTAGATCCTAAAAGTTTAAATTTTTGGCAGAAACAGAATCTGTTTGGATCTCAGTTATTAGGAGCAAT
GCCAGAGTTAGTACCTATCACTAAAATTATTGCTCATTACTTAGAATACTGGGATGGTAGTGGTAAGCCAGATGGTCTCA
AAGAAGAAGAAATACCGATAGAATCTCGTATTCTGGGTTTAGTTTCTTACTTCCAAGAGCTGACAATACCAAGGGGTAAA
CGCCCTGCTCTTAGTTTGGGAGAATCTCTAGAAAAGTGTAGCGCTCGCAAAGGCACTTATTTTGACCCTACTTTAGTAGA
AACCCTCAACAATGTAGTTCGATTAACAGAAATGGGTCTAATGGAGTTACCTAAAAGGCCAAGTCAATTACCCAACGTTT
GGTTAGAAGATGTTGCTAGGCTAATCGAATAA

Upstream 100 bases:

>100_bases
TGAAAGTCTTACATGATTTATCTTTAAATATTATAGCTTACTAATTTAACAAATACCCTAAATTAATTCTGTCTTAGTTA
AATAATTATAATTTTAAAAA

Downstream 100 bases:

>100_bases
TCTGTGGGATCTCATGAGAAGGTGACAATTCTTGCAAGTGACTTAAAAAATTATGTTCGAGTTTTACCTTCCTCCAAACA
CCCCGTGAAGTCTATCCCAC

Product: putative sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MDSKATLNQLKKRSPEGKLPGSYGVYFKNTLVALCHALEDHILQVSSQHPEAKPLVLATFQQGKWYLQEADRYQELAQCS
RHIMIAAVADSGLSKHPTSKLDNVSLINLETTDSIVNEWNLIILAPSYRAMVLCHELSEDEYLPNCKPTVDIERKFYGLW
TFDETLVAKAAEILVERCRPYNPELADTIQKQHQEIIETKGIAPTDMSGVVSRIVSYLQKTQEQMIAINRQTRELWELED
QALRVTHNLNTNKLQAFIRMAQKVDEQDQTNPLASLQVAALCETLGNLLDLPTPKLRRLRLAGLLFRVGLVSAPKEVFSK
TPDELDPKSLNFWQKQNLFGSQLLGAMPELVPITKIIAHYLEYWDGSGKPDGLKEEEIPIESRILGLVSYFQELTIPRGK
RPALSLGESLEKCSARKGTYFDPTLVETLNNVVRLTEMGLMELPKRPSQLPNVWLEDVARLIE

Sequences:

>Translated_463_residues
MDSKATLNQLKKRSPEGKLPGSYGVYFKNTLVALCHALEDHILQVSSQHPEAKPLVLATFQQGKWYLQEADRYQELAQCS
RHIMIAAVADSGLSKHPTSKLDNVSLINLETTDSIVNEWNLIILAPSYRAMVLCHELSEDEYLPNCKPTVDIERKFYGLW
TFDETLVAKAAEILVERCRPYNPELADTIQKQHQEIIETKGIAPTDMSGVVSRIVSYLQKTQEQMIAINRQTRELWELED
QALRVTHNLNTNKLQAFIRMAQKVDEQDQTNPLASLQVAALCETLGNLLDLPTPKLRRLRLAGLLFRVGLVSAPKEVFSK
TPDELDPKSLNFWQKQNLFGSQLLGAMPELVPITKIIAHYLEYWDGSGKPDGLKEEEIPIESRILGLVSYFQELTIPRGK
RPALSLGESLEKCSARKGTYFDPTLVETLNNVVRLTEMGLMELPKRPSQLPNVWLEDVARLIE
>Mature_463_residues
MDSKATLNQLKKRSPEGKLPGSYGVYFKNTLVALCHALEDHILQVSSQHPEAKPLVLATFQQGKWYLQEADRYQELAQCS
RHIMIAAVADSGLSKHPTSKLDNVSLINLETTDSIVNEWNLIILAPSYRAMVLCHELSEDEYLPNCKPTVDIERKFYGLW
TFDETLVAKAAEILVERCRPYNPELADTIQKQHQEIIETKGIAPTDMSGVVSRIVSYLQKTQEQMIAINRQTRELWELED
QALRVTHNLNTNKLQAFIRMAQKVDEQDQTNPLASLQVAALCETLGNLLDLPTPKLRRLRLAGLLFRVGLVSAPKEVFSK
TPDELDPKSLNFWQKQNLFGSQLLGAMPELVPITKIIAHYLEYWDGSGKPDGLKEEEIPIESRILGLVSYFQELTIPRGK
RPALSLGESLEKCSARKGTYFDPTLVETLNNVVRLTEMGLMELPKRPSQLPNVWLEDVARLIE

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG4250

COG function: function code T; Predicted sensor protein/domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 52412; Mature: 52412

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSKATLNQLKKRSPEGKLPGSYGVYFKNTLVALCHALEDHILQVSSQHPEAKPLVLATF
CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
QQGKWYLQEADRYQELAQCSRHIMIAAVADSGLSKHPTSKLDNVSLINLETTDSIVNEWN
CCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCEEEEEECHHHHHHCCCC
LIILAPSYRAMVLCHELSEDEYLPNCKPTVDIERKFYGLWTFDETLVAKAAEILVERCRP
EEEECCCHHHHHHHHHCCCCCCCCCCCCCCEECHHEEEEECHHHHHHHHHHHHHHHHCCC
YNPELADTIQKQHQEIIETKGIAPTDMSGVVSRIVSYLQKTQEQMIAINRQTRELWELED
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QALRVTHNLNTNKLQAFIRMAQKVDEQDQTNPLASLQVAALCETLGNLLDLPTPKLRRLR
HHHHHHCCCCHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LAGLLFRVGLVSAPKEVFSKTPDELDPKSLNFWQKQNLFGSQLLGAMPELVPITKIIAHY
HHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCHHHHHHHHCHHHHHHHHHHHHH
LEYWDGSGKPDGLKEEEIPIESRILGLVSYFQELTIPRGKRPALSLGESLEKCSARKGTY
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCC
FDPTLVETLNNVVRLTEMGLMELPKRPSQLPNVWLEDVARLIE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
>Mature Secondary Structure
MDSKATLNQLKKRSPEGKLPGSYGVYFKNTLVALCHALEDHILQVSSQHPEAKPLVLATF
CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
QQGKWYLQEADRYQELAQCSRHIMIAAVADSGLSKHPTSKLDNVSLINLETTDSIVNEWN
CCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCEEEEEECHHHHHHCCCC
LIILAPSYRAMVLCHELSEDEYLPNCKPTVDIERKFYGLWTFDETLVAKAAEILVERCRP
EEEECCCHHHHHHHHHCCCCCCCCCCCCCCEECHHEEEEECHHHHHHHHHHHHHHHHCCC
YNPELADTIQKQHQEIIETKGIAPTDMSGVVSRIVSYLQKTQEQMIAINRQTRELWELED
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QALRVTHNLNTNKLQAFIRMAQKVDEQDQTNPLASLQVAALCETLGNLLDLPTPKLRRLR
HHHHHHCCCCHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LAGLLFRVGLVSAPKEVFSKTPDELDPKSLNFWQKQNLFGSQLLGAMPELVPITKIIAHY
HHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCHHHHHHHHCHHHHHHHHHHHHH
LEYWDGSGKPDGLKEEEIPIESRILGLVSYFQELTIPRGKRPALSLGESLEKCSARKGTY
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCC
FDPTLVETLNNVVRLTEMGLMELPKRPSQLPNVWLEDVARLIE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]