| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477689
Identifier: 113477689
GI number: 113477689
Start: 6601516
End: 6602184
Strand: Reverse
Name: 113477689
Synonym: Tery_4280
Alternate gene names: NA
Gene position: 6602184-6601516 (Counterclockwise)
Preceding gene: 113477690
Following gene: 113477688
Centisome position: 85.19
GC content: 35.43
Gene sequence:
>669_bases ATGTCTAAATTCAAGCGTCAGAAAAAATTCAGCCTGGAAGGAAAAGTCCAAGAAGTTACTATCAAGGATGGCTACAAGCT GAAATATGTTCATGTAGAGACACTGGCCGGAAATAATTATGTTGTCAAAGTAGCCAAGCATTTACGGCGAAACTTTTCAT CAGTATTAACACCAGGTTTAGAGGTGAAAATCAAAGGTGAAATGGCATTATGTAAAAAAACTGGTGAAGAAGAGCTTAAG GCTTTTAAGATTACACCAGATTTTACTGCAAAAGCTACAGAAATATGGCCAAGTCAGCCTGTAGCATTACTTGAAAAGTC ATCAAGTCAACTAACAGAAATGAAGTTGCCCGATACTGAGGAGATATCTAGTAAATCTCAAAAAACGACTGAAGGTAATG CTAAATGTGTAGGTAAAAAAGCTGAAATTTTGGTATGTCAAAAATCCGATTGTGAAAAACGAGGTGCAAGTAAAATTTGT AAAGCATTGTCTAAAGCATTGAGCGAGCATGATTTACAAGACCAGGTAAAAATCAAGAAGACAGGATGTCTGAAAAAATG TAAAGCTGGACCCAATATAATAGTTATGCCCCAGAAAGCTAAATATAGTCGTATTCGTTCAGCAGAAATTCCTCAAGTTA TTCAAAAACATTTCGTATTAAAAGCATAA
Upstream 100 bases:
>100_bases GTATTTATCTGTAAAGTAGAGATAAAAAACTTTATATCTAAGTAATTAAACTTATCCCAAGCTACACAGATAACTATTAG TAAACATACAGCAACCAATA
Downstream 100 bases:
>100_bases CACAAAAGTTTCCAGATTGATAGTAGCTTTCTGTAATTCCAATCTCCTCAAAGAGATTGGAAATTTTCTGCTGTATAGTG ATAAGAAAGAATTAAATATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 222; Mature: 221
Protein sequence:
>222_residues MSKFKRQKKFSLEGKVQEVTIKDGYKLKYVHVETLAGNNYVVKVAKHLRRNFSSVLTPGLEVKIKGEMALCKKTGEEELK AFKITPDFTAKATEIWPSQPVALLEKSSSQLTEMKLPDTEEISSKSQKTTEGNAKCVGKKAEILVCQKSDCEKRGASKIC KALSKALSEHDLQDQVKIKKTGCLKKCKAGPNIIVMPQKAKYSRIRSAEIPQVIQKHFVLKA
Sequences:
>Translated_222_residues MSKFKRQKKFSLEGKVQEVTIKDGYKLKYVHVETLAGNNYVVKVAKHLRRNFSSVLTPGLEVKIKGEMALCKKTGEEELK AFKITPDFTAKATEIWPSQPVALLEKSSSQLTEMKLPDTEEISSKSQKTTEGNAKCVGKKAEILVCQKSDCEKRGASKIC KALSKALSEHDLQDQVKIKKTGCLKKCKAGPNIIVMPQKAKYSRIRSAEIPQVIQKHFVLKA >Mature_221_residues SKFKRQKKFSLEGKVQEVTIKDGYKLKYVHVETLAGNNYVVKVAKHLRRNFSSVLTPGLEVKIKGEMALCKKTGEEELKA FKITPDFTAKATEIWPSQPVALLEKSSSQLTEMKLPDTEEISSKSQKTTEGNAKCVGKKAEILVCQKSDCEKRGASKICK ALSKALSEHDLQDQVKIKKTGCLKKCKAGPNIIVMPQKAKYSRIRSAEIPQVIQKHFVLKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24795; Mature: 24664
Theoretical pI: Translated: 10.37; Mature: 10.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKFKRQKKFSLEGKVQEVTIKDGYKLKYVHVETLAGNNYVVKVAKHLRRNFSSVLTPGL CCCHHHHHCCCCCCCEEEEEECCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCE EVKIKGEMALCKKTGEEELKAFKITPDFTAKATEIWPSQPVALLEKSSSQLTEMKLPDTE EEEECCCCHHHHHCCHHHHEEEECCCCCCCCHHCCCCCCCHHHHHCCCHHHHCCCCCCHH EISSKSQKTTEGNAKCVGKKAEILVCQKSDCEKRGASKICKALSKALSEHDLQDQVKIKK HHHCCCCCCCCCCCEEECCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHCCCHHHHHHHH TGCLKKCKAGPNIIVMPQKAKYSRIRSAEIPQVIQKHFVLKA HHHHHHHCCCCCEEEECCCHHHHHHCCCCHHHHHHHHHCCCC >Mature Secondary Structure SKFKRQKKFSLEGKVQEVTIKDGYKLKYVHVETLAGNNYVVKVAKHLRRNFSSVLTPGL CCHHHHHCCCCCCCEEEEEECCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCE EVKIKGEMALCKKTGEEELKAFKITPDFTAKATEIWPSQPVALLEKSSSQLTEMKLPDTE EEEECCCCHHHHHCCHHHHEEEECCCCCCCCHHCCCCCCCHHHHHCCCHHHHCCCCCCHH EISSKSQKTTEGNAKCVGKKAEILVCQKSDCEKRGASKICKALSKALSEHDLQDQVKIKK HHHCCCCCCCCCCCEEECCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHCCCHHHHHHHH TGCLKKCKAGPNIIVMPQKAKYSRIRSAEIPQVIQKHFVLKA HHHHHHHCCCCCEEEECCCHHHHHHCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA