| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477627
Identifier: 113477627
GI number: 113477627
Start: 6499151
End: 6499837
Strand: Reverse
Name: 113477627
Synonym: Tery_4214
Alternate gene names: NA
Gene position: 6499837-6499151 (Counterclockwise)
Preceding gene: 113477628
Following gene: 113477624
Centisome position: 83.87
GC content: 33.33
Gene sequence:
>687_bases ATGGCACGAGGAGAACAAATATATACTATTAGAGAGTTTCTAAATATAGACGGTGTTTACGAACATCATGGCATTGACTA TGGCGATGGAACAGTTATTCATTATCGCAAAGGAACAGAAACTATTGAACGAACTTCTAAAGCTTATTTTACTGATGGGA GAAAAGTTTATGTTAAACGTTACCCACTTCGTTATATTGCTGATACAGTTATTCAAAGAGCAGAAAATAGATTAGGAGAA AGAAAATATAATATTATTTTTAATAATTGTGAACACTTTGCAAGTTGGTGTATTACTGGAGTTAGTGATAGTCAACAAAT AAAAAACTTTATTCCTCTACTGAATTATATTGATATTGAGCAAATATCTGAACAAGTTAAGGAAGCAATTTTCGGGGGAA AAACTCAGGTCAATACTGACAAATTGGTAAGTCAAGCTTTGGCAGATATTAAAGTGGCTTGGGAAAATATTCAATCTGAA TATAAACAGAATTTACAGGAAGTATATGACTGGCAAAATGTTGCAGTTGCAGCTCTCAGAAAAGAACGGGAAGATTTAGC TTGTGCTGCTTTAATGCGAAAGCGAAAACATCAAGAACGTGCTGATGAATTAGCGGGTAGTTTGCAGAGGCTAGCAACTA TAACAGAAAAACTTTTACGCAGCAAAAATTTAATTTGTAAATATTAG
Upstream 100 bases:
>100_bases GTCCCACTAAATTGATCTAAAAATAGTGCTAATAATAAGAATCTACATCTATTGTTTATTTTTAGATTAAAGTGTAATGA GATAAATTTAGGAAAATAAT
Downstream 100 bases:
>100_bases TATTGCTGATCATAAATTATAGCAAAGATAGTAATACTAATTCTGGTTTAGAATATTAGCTCTATTGAAAGGGGACTTGA CAGTTAAATAGAAATTAACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 228; Mature: 227
Protein sequence:
>228_residues MARGEQIYTIREFLNIDGVYEHHGIDYGDGTVIHYRKGTETIERTSKAYFTDGRKVYVKRYPLRYIADTVIQRAENRLGE RKYNIIFNNCEHFASWCITGVSDSQQIKNFIPLLNYIDIEQISEQVKEAIFGGKTQVNTDKLVSQALADIKVAWENIQSE YKQNLQEVYDWQNVAVAALRKEREDLACAALMRKRKHQERADELAGSLQRLATITEKLLRSKNLICKY
Sequences:
>Translated_228_residues MARGEQIYTIREFLNIDGVYEHHGIDYGDGTVIHYRKGTETIERTSKAYFTDGRKVYVKRYPLRYIADTVIQRAENRLGE RKYNIIFNNCEHFASWCITGVSDSQQIKNFIPLLNYIDIEQISEQVKEAIFGGKTQVNTDKLVSQALADIKVAWENIQSE YKQNLQEVYDWQNVAVAALRKEREDLACAALMRKRKHQERADELAGSLQRLATITEKLLRSKNLICKY >Mature_227_residues ARGEQIYTIREFLNIDGVYEHHGIDYGDGTVIHYRKGTETIERTSKAYFTDGRKVYVKRYPLRYIADTVIQRAENRLGER KYNIIFNNCEHFASWCITGVSDSQQIKNFIPLLNYIDIEQISEQVKEAIFGGKTQVNTDKLVSQALADIKVAWENIQSEY KQNLQEVYDWQNVAVAALRKEREDLACAALMRKRKHQERADELAGSLQRLATITEKLLRSKNLICKY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26517; Mature: 26386
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARGEQIYTIREFLNIDGVYEHHGIDYGDGTVIHYRKGTETIERTSKAYFTDGRKVYVKR CCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEC YPLRYIADTVIQRAENRLGERKYNIIFNNCEHFASWCITGVSDSQQIKNFIPLLNYIDIE CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH QISEQVKEAIFGGKTQVNTDKLVSQALADIKVAWENIQSEYKQNLQEVYDWQNVAVAALR HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KEREDLACAALMRKRKHQERADELAGSLQRLATITEKLLRSKNLICKY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure ARGEQIYTIREFLNIDGVYEHHGIDYGDGTVIHYRKGTETIERTSKAYFTDGRKVYVKR CCCHHHHHHHHHHCCCCCHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEC YPLRYIADTVIQRAENRLGERKYNIIFNNCEHFASWCITGVSDSQQIKNFIPLLNYIDIE CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH QISEQVKEAIFGGKTQVNTDKLVSQALADIKVAWENIQSEYKQNLQEVYDWQNVAVAALR HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KEREDLACAALMRKRKHQERADELAGSLQRLATITEKLLRSKNLICKY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA