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The map label for this gene is yjcF [C]

Identifier: 113476927

GI number: 113476927

Start: 5232414

End: 5233184

Strand: Reverse

Name: yjcF [C]

Synonym: Tery_3418

Alternate gene names: 113476927

Gene position: 5233184-5232414 (Counterclockwise)

Preceding gene: 113476930

Following gene: 113476926

Centisome position: 67.52

GC content: 33.33

Gene sequence:

>771_bases
ATGAGTGGTATTGAAGGATTATGGCCTCATAATATTAGCCCCAATCAACTCGCAGTGTTAGAAAGAAAATTGGTGCTTTG
GTTGCGATCGCAGAATTTTAACTCTGAGTTAACTTCTCATTCGTTACAAAATAAGTCTTCAGAGGAGTTGCAAAGTTTGA
TGTTATCTGCAACTTTTGCTGGATGTGATTTTTTAGAGTTTAGAATTATGAGCAAAAATGTGGTTGAGGCAAATACAGAA
GATTTATTGGACTTAGCAAATATTGCAGGTCTAAATCCTACTAAAGATTTTGCTGGTGCTAAATTTAATGGTGTTAATTT
ATGTGGTGTTGATTTAAGTGGGGTAAATCTATATGCTGCTTATTTAAGAGGTGCAGATTTAAGTGATGCAGATTTGAGTG
AAGCTAATCTTAGTCAAGTAAATTTGGGTGGTGCAGATTTGAGTGGTGCGTTGTTAAGTAATGCCAATTTAACTGATGCA
AACTTGTACCGTGTTAGTCTAGCTTTGGCTAATTTAAGTGGTGCTAATTTAAGTGGTGCTAATTTAAGTAATGCCAATTT
AAGTAATGCCAATTTAAGTAATGCTAATTTAAGTAATGCCAATTTAAGTAATGCTAATTTAAGTAATGCTGGATTAGTAT
TAACAAATTTAAAAGGAACAAATTTTCAACATACAAAAGTAGAGAAAGCTAGGTTATGGCATGATGCTAGTTTATCTGAG
GGAATGAAGCAAAACTTAATTAGTCGTGGAGTAGTATTTGAGAATGATTAG

Upstream 100 bases:

>100_bases
ACGAGATGATTTGAGGACTATTAAATCAGTTAAAACTTATTCTTAGGTAGAAAAAACTGTTATAACAATTAAAAATATAG
CTGATAAAATTTTTGTTTCT

Downstream 100 bases:

>100_bases
TCAAAAAAAAACTTAGGAATTAATAAATTATCATAAAATAATGAATCATGAGGGTAGGTTTGTTATGGATAACTCAAGTT
AGATTATATGGTGTTATCAA

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MSGIEGLWPHNISPNQLAVLERKLVLWLRSQNFNSELTSHSLQNKSSEELQSLMLSATFAGCDFLEFRIMSKNVVEANTE
DLLDLANIAGLNPTKDFAGAKFNGVNLCGVDLSGVNLYAAYLRGADLSDADLSEANLSQVNLGGADLSGALLSNANLTDA
NLYRVSLALANLSGANLSGANLSNANLSNANLSNANLSNANLSNANLSNAGLVLTNLKGTNFQHTKVEKARLWHDASLSE
GMKQNLISRGVVFEND

Sequences:

>Translated_256_residues
MSGIEGLWPHNISPNQLAVLERKLVLWLRSQNFNSELTSHSLQNKSSEELQSLMLSATFAGCDFLEFRIMSKNVVEANTE
DLLDLANIAGLNPTKDFAGAKFNGVNLCGVDLSGVNLYAAYLRGADLSDADLSEANLSQVNLGGADLSGALLSNANLTDA
NLYRVSLALANLSGANLSGANLSNANLSNANLSNANLSNANLSNANLSNAGLVLTNLKGTNFQHTKVEKARLWHDASLSE
GMKQNLISRGVVFEND
>Mature_255_residues
SGIEGLWPHNISPNQLAVLERKLVLWLRSQNFNSELTSHSLQNKSSEELQSLMLSATFAGCDFLEFRIMSKNVVEANTED
LLDLANIAGLNPTKDFAGAKFNGVNLCGVDLSGVNLYAAYLRGADLSDADLSEANLSQVNLGGADLSGALLSNANLTDAN
LYRVSLALANLSGANLSGANLSNANLSNANLSNANLSNANLSNANLSNAGLVLTNLKGTNFQHTKVEKARLWHDASLSEG
MKQNLISRGVVFEND

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=167, Percent_Identity=34.1317365269461, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI221377802, Length=162, Percent_Identity=37.037037037037, Blast_Score=71, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 27252; Mature: 27121

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGIEGLWPHNISPNQLAVLERKLVLWLRSQNFNSELTSHSLQNKSSEELQSLMLSATFA
CCCCCCCCCCCCCCCHHHHHHHHHEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHC
GCDFLEFRIMSKNVVEANTEDLLDLANIAGLNPTKDFAGAKFNGVNLCGVDLSGVNLYAA
CCCEEEEEEECCCHHCCCHHHHHHHHHHCCCCCCCHHCCCEECCEEEEEECCCCHHEEEE
YLRGADLSDADLSEANLSQVNLGGADLSGALLSNANLTDANLYRVSLALANLSGANLSGA
ECCCCCCCCCCCCCCCCCEEECCCCCCCCHHCCCCCCCCCCEEEEEEEEEECCCCCCCCC
NLSNANLSNANLSNANLSNANLSNANLSNAGLVLTNLKGTNFQHTKVEKARLWHDASLSE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCHHHH
GMKQNLISRGVVFEND
HHHHHHHHCCCEEECC
>Mature Secondary Structure 
SGIEGLWPHNISPNQLAVLERKLVLWLRSQNFNSELTSHSLQNKSSEELQSLMLSATFA
CCCCCCCCCCCCCCHHHHHHHHHEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHC
GCDFLEFRIMSKNVVEANTEDLLDLANIAGLNPTKDFAGAKFNGVNLCGVDLSGVNLYAA
CCCEEEEEEECCCHHCCCHHHHHHHHHHCCCCCCCHHCCCEECCEEEEEECCCCHHEEEE
YLRGADLSDADLSEANLSQVNLGGADLSGALLSNANLTDANLYRVSLALANLSGANLSGA
ECCCCCCCCCCCCCCCCCEEECCCCCCCCHHCCCCCCCCCCEEEEEEEEEECCCCCCCCC
NLSNANLSNANLSNANLSNANLSNANLSNAGLVLTNLKGTNFQHTKVEKARLWHDASLSE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCHHHH
GMKQNLISRGVVFEND
HHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA