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The map label for this gene is yjcF [C]

Identifier: 113476926

GI number: 113476926

Start: 5229829

End: 5231175

Strand: Reverse

Name: yjcF [C]

Synonym: Tery_3417

Alternate gene names: 113476926

Gene position: 5231175-5229829 (Counterclockwise)

Preceding gene: 113476927

Following gene: 113476925

Centisome position: 67.5

GC content: 32.59

Gene sequence:

>1347_bases
ATGGCTAACCAAAAATCACTTGATAAATTACAGAAACTAATTAAAGATACTATTAATCAAGCAATAAATAATGGGGATCA
AGCTAGCCATCAAAAATTGACTAACAATTTTGCTGGTGTCAACCTTGAGTCCGTTGACCTGAGTATGAGTGATCTAGATG
ATGTTAATTTGAGTGAAACTATTCTCCGGGGTGCTTATCTACTTTGTGCTAATTTGAAAAGAACTAACTTTAGTAATAGT
GATCTGAGTGGTGCTAATCTAAGTGGGGCAATAATGTGGTTTGCTAACTTTAGTAAAGTAAATTTTAAAGGGGCAGATAT
CAGAGGTGCTAGTTTCAAAAGTGCTAACCTCAAAGGTGCTGACCTAGAAGGTGCTAACCTCTGGCGTAGTGAGATTACAG
ATGCATACTTAATTCAAGCTAATTTATTATACGCTAATTTAATTCGTGCTAATCTTAGAAATAGTAATCTGACAAATGTT
AACTTGAGTTATGCGGAACTTAATGATGCAAACCTCAACGAAGCTAATCTTATAGGTACTAATTTTAGTTATGCTAATTT
GAGTAATGCTACTCTTAAAGATGCTAATCTCAAAGATTCTAATTTATCTAATGTTAATCTTGTTGGAACTCAATTAAATG
GAGCTAATCTTGAAGGTGCTAATCTTGAAGGTGCTAATCTTATAGGTACTAATTTTAGTGATGCTAATCTTAATTACACA
AAGTTGAGGAATACTAATTTAAATCATGTTAATTTAAGAGGGGTGAAAATTAATCATGGAACAGAATTAGATAATAAGTG
GTATCTGGTTTGGGATATTATTAATCATGGTGCTTATGGGAGAAATTTAAGTGGTGTTCATCTGGAAAATGCTGATCTTA
AGGGTGCTAATATCGGCACTGCTAATTTAACTAATGCTAATCTGGAATATGCTAACCTCAGATATGCTAACCTTAGTAAT
GCTAATCTCGCTCATATTAAATTAACTAATGCTAATCTAGCAGATATTAATTTGATTAAGGCAAATTTATATAGTGCAAA
TATGCAAGGAGCTAACCTGAGCAATACTTTATTATTTAATTCTATTATGACGGGTGCTTTATTAAATCAAGCTAAGCTGC
TAAAAGCACAATTGTGTGATGCGGAATTATCAAATGCAAAGTTAATTATGGCAAATTTAATGAACGCTAACTTGAAAAAT
GCTAGGTTATTAGGGGCTGATTTAAGGAAGATAAATCTAGAAGGTGCAGAATTAGATGGTGCTATATTTGGTAATAATAT
GGGAGTTTCTGAGAAGATGAAGCAGGATTTAATTAAACGTGGGGCTGTTTTTAAAGATAAGTTTTAG

Upstream 100 bases:

>100_bases
TTAACATCTAATAGACAACAGGCAAAAATAGATTATAGCAAATATTTATCTAAATGATGTAACATCTTAATTGAAAGCCT
TAAGGAGCAGATAGCTATAT

Downstream 100 bases:

>100_bases
GTATAATTTGTAAATAAATTAACTAATTAAAGTAGGGTAAGCTTAATCTAAAATTATATCAAATATACTTGACAAAAAAA
TAAAATATTCGTAGGAAATT

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 447

Protein sequence:

>448_residues
MANQKSLDKLQKLIKDTINQAINNGDQASHQKLTNNFAGVNLESVDLSMSDLDDVNLSETILRGAYLLCANLKRTNFSNS
DLSGANLSGAIMWFANFSKVNFKGADIRGASFKSANLKGADLEGANLWRSEITDAYLIQANLLYANLIRANLRNSNLTNV
NLSYAELNDANLNEANLIGTNFSYANLSNATLKDANLKDSNLSNVNLVGTQLNGANLEGANLEGANLIGTNFSDANLNYT
KLRNTNLNHVNLRGVKINHGTELDNKWYLVWDIINHGAYGRNLSGVHLENADLKGANIGTANLTNANLEYANLRYANLSN
ANLAHIKLTNANLADINLIKANLYSANMQGANLSNTLLFNSIMTGALLNQAKLLKAQLCDAELSNAKLIMANLMNANLKN
ARLLGADLRKINLEGAELDGAIFGNNMGVSEKMKQDLIKRGAVFKDKF

Sequences:

>Translated_448_residues
MANQKSLDKLQKLIKDTINQAINNGDQASHQKLTNNFAGVNLESVDLSMSDLDDVNLSETILRGAYLLCANLKRTNFSNS
DLSGANLSGAIMWFANFSKVNFKGADIRGASFKSANLKGADLEGANLWRSEITDAYLIQANLLYANLIRANLRNSNLTNV
NLSYAELNDANLNEANLIGTNFSYANLSNATLKDANLKDSNLSNVNLVGTQLNGANLEGANLEGANLIGTNFSDANLNYT
KLRNTNLNHVNLRGVKINHGTELDNKWYLVWDIINHGAYGRNLSGVHLENADLKGANIGTANLTNANLEYANLRYANLSN
ANLAHIKLTNANLADINLIKANLYSANMQGANLSNTLLFNSIMTGALLNQAKLLKAQLCDAELSNAKLIMANLMNANLKN
ARLLGADLRKINLEGAELDGAIFGNNMGVSEKMKQDLIKRGAVFKDKF
>Mature_447_residues
ANQKSLDKLQKLIKDTINQAINNGDQASHQKLTNNFAGVNLESVDLSMSDLDDVNLSETILRGAYLLCANLKRTNFSNSD
LSGANLSGAIMWFANFSKVNFKGADIRGASFKSANLKGADLEGANLWRSEITDAYLIQANLLYANLIRANLRNSNLTNVN
LSYAELNDANLNEANLIGTNFSYANLSNATLKDANLKDSNLSNVNLVGTQLNGANLEGANLEGANLIGTNFSDANLNYTK
LRNTNLNHVNLRGVKINHGTELDNKWYLVWDIINHGAYGRNLSGVHLENADLKGANIGTANLTNANLEYANLRYANLSNA
NLAHIKLTNANLADINLIKANLYSANMQGANLSNTLLFNSIMTGALLNQAKLLKAQLCDAELSNAKLIMANLMNANLKNA
RLLGADLRKINLEGAELDGAIFGNNMGVSEKMKQDLIKRGAVFKDKF

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=150, Percent_Identity=37.3333333333333, Blast_Score=77, Evalue=3e-14,
Organism=Escherichia coli, GI1790502, Length=240, Percent_Identity=27.0833333333333, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221377802, Length=156, Percent_Identity=37.1794871794872, Blast_Score=80, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 48667; Mature: 48535

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANQKSLDKLQKLIKDTINQAINNGDQASHQKLTNNFAGVNLESVDLSMSDLDDVNLSET
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCHHCCCCCCHHHH
ILRGAYLLCANLKRTNFSNSDLSGANLSGAIMWFANFSKVNFKGADIRGASFKSANLKGA
HHHHHEEEEECCHHCCCCCCCCCCCCCCEEEEEEEECCEEEECCCCCCCCCCCCCCCCCC
DLEGANLWRSEITDAYLIQANLLYANLIRANLRNSNLTNVNLSYAELNDANLNEANLIGT
CCCCCHHHHHHCCCEEEEEEHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEC
NFSYANLSNATLKDANLKDSNLSNVNLVGTQLNGANLEGANLEGANLIGTNFSDANLNYT
CCCCCCCCCCEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCEEE
KLRNTNLNHVNLRGVKINHGTELDNKWYLVWDIINHGAYGRNLSGVHLENADLKGANIGT
EEECCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCC
ANLTNANLEYANLRYANLSNANLAHIKLTNANLADINLIKANLYSANMQGANLSNTLLFN
CCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCHHHHHH
SIMTGALLNQAKLLKAQLCDAELSNAKLIMANLMNANLKNARLLGADLRKINLEGAELDG
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCCEEEECCEEEEECCCCEECC
AIFGNNMGVSEKMKQDLIKRGAVFKDKF
EEECCCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ANQKSLDKLQKLIKDTINQAINNGDQASHQKLTNNFAGVNLESVDLSMSDLDDVNLSET
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCHHCCCCCCHHHH
ILRGAYLLCANLKRTNFSNSDLSGANLSGAIMWFANFSKVNFKGADIRGASFKSANLKGA
HHHHHEEEEECCHHCCCCCCCCCCCCCCEEEEEEEECCEEEECCCCCCCCCCCCCCCCCC
DLEGANLWRSEITDAYLIQANLLYANLIRANLRNSNLTNVNLSYAELNDANLNEANLIGT
CCCCCHHHHHHCCCEEEEEEHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEC
NFSYANLSNATLKDANLKDSNLSNVNLVGTQLNGANLEGANLEGANLIGTNFSDANLNYT
CCCCCCCCCCEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCEEE
KLRNTNLNHVNLRGVKINHGTELDNKWYLVWDIINHGAYGRNLSGVHLENADLKGANIGT
EEECCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCC
ANLTNANLEYANLRYANLSNANLAHIKLTNANLADINLIKANLYSANMQGANLSNTLLFN
CCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCHHHHHH
SIMTGALLNQAKLLKAQLCDAELSNAKLIMANLMNANLKNARLLGADLRKINLEGAELDG
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCCEEEECCEEEEECCCCEECC
AIFGNNMGVSEKMKQDLIKRGAVFKDKF
EEECCCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]