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The map label for this gene is rbgA [H]

Identifier: 113476888

GI number: 113476888

Start: 5173187

End: 5174044

Strand: Reverse

Name: rbgA [H]

Synonym: Tery_3374

Alternate gene names: 113476888

Gene position: 5174044-5173187 (Counterclockwise)

Preceding gene: 113476889

Following gene: 113476887

Centisome position: 66.76

GC content: 39.51

Gene sequence:

>858_bases
ATGACTATTCAATGGTATCCAGGCCATATTGCTAAGGCTGAACGAAATCTTAAAGAACAACTGAAACGGGTTGATGTGGT
TTTAGAAGTTCGAGATGCCCGTATTCCACTTGCTACTCGCCACCCCCAGGTTTCTGAATGGGTAGGGAGTAAGGCACAAG
TTTTAGTCATTAACCGTATAGATATGATTTCCTCAGAAGTTATGAAAATTTGGACTGAATGGTTTGAAGCTAATGGGGAA
ATGCCTTATTTTACTAATGCTCAGTTGGGCGATGGAGTGAAGAATTTGGCCAAGGCAGTACGGGAGGCTGGTCGTGCTGT
TAATCTTAGACGGCGCGATCGCGGAATGTTACCTCGGCCTGTACGTGCTGTGGTAATTGGTTTTCCTAATGTGGGAAAGT
CGGCTCTAATTAATAGACTGTTAAAGAGAAAGGTTGTTGAAAGTGCTAGGCGTCCTGGTGTTACTAAGCAATTAAGATGG
GTACGCATTTCTGATGAGATTGAATTGTTAGATGCTCCTGGTGTAATTCCTAGTCAAATTAAAAATAGGGAGGATGCAAT
TAAGTTGGCAATTTGTGAGGATATCGGGGATGCGGCTTATGATAATCAGCAAGTTGCTGCTAGTATGATTGATTTTTTAA
CTTTTTTGGAAACTGATAGTAATGGTTTTGTATCTACTTCTTGTTTGAAATATCGTTATCAATTAGAAGCTCATAATTAT
ACGGGTGAGAGTTATTTGCATGAGTTAGCAAATCAAATTTATCAAGGAGATGTTGAACGGACTTCAAGACGAATTTTGGA
TGATTTTCGTAAGGGTTTTTTGGGGAAAATATCTTTAGAGTTACCACCTTTCAAATAG

Upstream 100 bases:

>100_bases
TAACCATTAGGTCTTCCTCACTATGGGGAGCATTTTGCCCCCACCACTTACTTTATTAGCTCTCTTAAATTTTGATTTTC
ACCAATTTTAATTTTCCCTC

Downstream 100 bases:

>100_bases
CAGTACTATTTTATTTTAGGTTTAAAATCAAGTCAAAGAATAGAAATTAACTTTGAAGTAAGTGAATATACTGCTAACAA
TGTCTTTCATTTTTTTGTAG

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MTIQWYPGHIAKAERNLKEQLKRVDVVLEVRDARIPLATRHPQVSEWVGSKAQVLVINRIDMISSEVMKIWTEWFEANGE
MPYFTNAQLGDGVKNLAKAVREAGRAVNLRRRDRGMLPRPVRAVVIGFPNVGKSALINRLLKRKVVESARRPGVTKQLRW
VRISDEIELLDAPGVIPSQIKNREDAIKLAICEDIGDAAYDNQQVAASMIDFLTFLETDSNGFVSTSCLKYRYQLEAHNY
TGESYLHELANQIYQGDVERTSRRILDDFRKGFLGKISLELPPFK

Sequences:

>Translated_285_residues
MTIQWYPGHIAKAERNLKEQLKRVDVVLEVRDARIPLATRHPQVSEWVGSKAQVLVINRIDMISSEVMKIWTEWFEANGE
MPYFTNAQLGDGVKNLAKAVREAGRAVNLRRRDRGMLPRPVRAVVIGFPNVGKSALINRLLKRKVVESARRPGVTKQLRW
VRISDEIELLDAPGVIPSQIKNREDAIKLAICEDIGDAAYDNQQVAASMIDFLTFLETDSNGFVSTSCLKYRYQLEAHNY
TGESYLHELANQIYQGDVERTSRRILDDFRKGFLGKISLELPPFK
>Mature_284_residues
TIQWYPGHIAKAERNLKEQLKRVDVVLEVRDARIPLATRHPQVSEWVGSKAQVLVINRIDMISSEVMKIWTEWFEANGEM
PYFTNAQLGDGVKNLAKAVREAGRAVNLRRRDRGMLPRPVRAVVIGFPNVGKSALINRLLKRKVVESARRPGVTKQLRWV
RISDEIELLDAPGVIPSQIKNREDAIKLAICEDIGDAAYDNQQVAASMIDFLTFLETDSNGFVSTSCLKYRYQLEAHNYT
GESYLHELANQIYQGDVERTSRRILDDFRKGFLGKISLELPPFK

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=306, Percent_Identity=29.4117647058824, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI296317324, Length=284, Percent_Identity=30.9859154929577, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI9506611, Length=284, Percent_Identity=30.9859154929577, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI45643129, Length=192, Percent_Identity=29.6875, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI45643127, Length=192, Percent_Identity=29.6875, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI45593130, Length=192, Percent_Identity=29.6875, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI7019419, Length=162, Percent_Identity=29.6296296296296, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193211047, Length=237, Percent_Identity=32.9113924050633, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17534827, Length=193, Percent_Identity=30.0518134715026, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI71990926, Length=158, Percent_Identity=34.8101265822785, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI32563985, Length=154, Percent_Identity=35.0649350649351, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI32563983, Length=158, Percent_Identity=34.8101265822785, Blast_Score=70, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6320842, Length=173, Percent_Identity=32.3699421965318, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6324381, Length=168, Percent_Identity=29.7619047619048, Blast_Score=78, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6323744, Length=227, Percent_Identity=26.431718061674, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI85815858, Length=315, Percent_Identity=26.6666666666667, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI19922460, Length=278, Percent_Identity=25.8992805755396, Blast_Score=71, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 32478; Mature: 32347

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIQWYPGHIAKAERNLKEQLKRVDVVLEVRDARIPLATRHPQVSEWVGSKAQVLVINRI
CEEEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHCCCCCEEEEEEHH
DMISSEVMKIWTEWFEANGEMPYFTNAQLGDGVKNLAKAVREAGRAVNLRRRDRGMLPRP
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCC
VRAVVIGFPNVGKSALINRLLKRKVVESARRPGVTKQLRWVRISDEIELLDAPGVIPSQI
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEECCCEEEECCCCCCHHHH
KNREDAIKLAICEDIGDAAYDNQQVAASMIDFLTFLETDSNGFVSTSCLKYRYQLEAHNY
CCHHHHEEEEHHHHCCCHHCCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHEEEEEECCCC
TGESYLHELANQIYQGDVERTSRRILDDFRKGFLGKISLELPPFK
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
>Mature Secondary Structure 
TIQWYPGHIAKAERNLKEQLKRVDVVLEVRDARIPLATRHPQVSEWVGSKAQVLVINRI
EEEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHCCCCCEEEEEEHH
DMISSEVMKIWTEWFEANGEMPYFTNAQLGDGVKNLAKAVREAGRAVNLRRRDRGMLPRP
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCC
VRAVVIGFPNVGKSALINRLLKRKVVESARRPGVTKQLRWVRISDEIELLDAPGVIPSQI
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEECCCEEEECCCCCCHHHH
KNREDAIKLAICEDIGDAAYDNQQVAASMIDFLTFLETDSNGFVSTSCLKYRYQLEAHNY
CCHHHHEEEEHHHHCCCHHCCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHEEEEEECCCC
TGESYLHELANQIYQGDVERTSRRILDDFRKGFLGKISLELPPFK
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]