| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476877
Identifier: 113476877
GI number: 113476877
Start: 5159483
End: 5159773
Strand: Reverse
Name: 113476877
Synonym: Tery_3363
Alternate gene names: NA
Gene position: 5159773-5159483 (Counterclockwise)
Preceding gene: 113476878
Following gene: 113476876
Centisome position: 66.58
GC content: 38.14
Gene sequence:
>291_bases ATGACTTATTTACTTACGACTACTAATACTCTGATGGCAAACTTGGAGGTAATGCCAAGCTTTCATGTTTTTTTGAGTAA CTTGGCTACAGGAGAAATTACAATACTGACTGCTATATTTTGGCTGGCAGTTGCTAGCTTAATTTCAATTCTTGCTGGTG CTATTGGTGGAATATGGTTAGCAGGAAAAGACTTAGGTTATGGTCTAGCTGCTACTATTGGTGGTTTGTTTGGTCCTGCT GGTGTCATTCCTGCAGTTATTGTGGGTTTGACAATTTTGAAATTTGTTTAG
Upstream 100 bases:
>100_bases TGTTAACTTTTAAATCTAAAGCCTAAAACCTAACACCTTAAAAGTCAATTGGTATAACTTGTAGAAAATAGTATGTTTCA AGATAATTAGGAGAAGAAAA
Downstream 100 bases:
>100_bases TTTCAAAAAAATGATTTTGAATAGGAGTTGATTTTTATGTTAGAAATAGGTTTGTATAGTGTCAAGTTGTTACTCAAGGG TAAACTGCTACGAGATCCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 96; Mature: 95
Protein sequence:
>96_residues MTYLLTTTNTLMANLEVMPSFHVFLSNLATGEITILTAIFWLAVASLISILAGAIGGIWLAGKDLGYGLAATIGGLFGPA GVIPAVIVGLTILKFV
Sequences:
>Translated_96_residues MTYLLTTTNTLMANLEVMPSFHVFLSNLATGEITILTAIFWLAVASLISILAGAIGGIWLAGKDLGYGLAATIGGLFGPA GVIPAVIVGLTILKFV >Mature_95_residues TYLLTTTNTLMANLEVMPSFHVFLSNLATGEITILTAIFWLAVASLISILAGAIGGIWLAGKDLGYGLAATIGGLFGPAG VIPAVIVGLTILKFV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9893; Mature: 9762
Theoretical pI: Translated: 5.55; Mature: 5.55
Prosite motif: PS01199 RIBOSOMAL_L1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYLLTTTNTLMANLEVMPSFHVFLSNLATGEITILTAIFWLAVASLISILAGAIGGIWL CEEEEEEHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEE AGKDLGYGLAATIGGLFGPAGVIPAVIVGLTILKFV CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHC >Mature Secondary Structure TYLLTTTNTLMANLEVMPSFHVFLSNLATGEITILTAIFWLAVASLISILAGAIGGIWL EEEEEEHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEE AGKDLGYGLAATIGGLFGPAGVIPAVIVGLTILKFV CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA